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Diffstat (limited to 'sci-biology/BBmap/BBmap-37.67.ebuild')
| -rw-r--r-- | sci-biology/BBmap/BBmap-37.67.ebuild | 42 |
1 files changed, 0 insertions, 42 deletions
diff --git a/sci-biology/BBmap/BBmap-37.67.ebuild b/sci-biology/BBmap/BBmap-37.67.ebuild deleted file mode 100644 index d8d2042ce..000000000 --- a/sci-biology/BBmap/BBmap-37.67.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="Short read aligner, K-mer-based error-correct and normalize, FASTA/Q tool" -HOMEPAGE="http://sourceforge.net/projects/bbmap/" -SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND=" - sys-cluster/openmpi[java] - >=virtual/jdk-1.7:* - dev-java/ant-core" -RDEPEND="${DEPEND} - >=virtual/jre-1.7:*" - -S="${WORKDIR}"/bbmap - -src_prepare(){ - # fix the line in build.xml to point to mpi.jar location - # <property name="mpijar" location="/tmp/mpi.jar" ></property> - # see bug #542700 - sed -e 's#/usr/common/usg/hpc/openmpi/gnu4.6/sge/1.8.1/ib_2.1-1.0.0/lib/mpi.jar#/usr/share/openmpi/lib/mpi.jar#' -i build.xml - sed -e 's#compiler="${jcompiler}" ##' -i build.xml -} - -src_compile(){ - ant dist || die -} - -src_install(){ - dobin *.sh - dodoc docs/readme.txt - java-pkg_dojar dist/lib/BBTools.jar -} |