diff options
Diffstat (limited to 'sci-biology/MaSuRCA')
| -rw-r--r-- | sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild | 10 | ||||
| -rw-r--r-- | sci-biology/MaSuRCA/MaSuRCA-4.1.0.ebuild | 29 | ||||
| -rw-r--r-- | sci-biology/MaSuRCA/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/MaSuRCA/metadata.xml | 3 |
4 files changed, 39 insertions, 4 deletions
diff --git a/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild index 8e6d2925e..7b070e595 100644 --- a/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild +++ b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild @@ -1,17 +1,19 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore" HOMEPAGE="http://www.genome.umd.edu/masurca.html http://bioinformatics.oxfordjournals.org/content/29/21/2669 - https://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" + https://github.com/alekseyzimin/masurca" SRC_URI="https://github.com/alekseyzimin/masurca/releases/download/v${PV}/${P}.tar.gz" LICENSE="BSD GPL-2 GPL-3" SLOT="0" -KEYWORDS="~amd64" +# Known to produce build failure: +# https://github.com/alekseyzimin/masurca/issues/323 +KEYWORDS="" DEPEND=" >=dev-lang/perl-5.8 diff --git a/sci-biology/MaSuRCA/MaSuRCA-4.1.0.ebuild b/sci-biology/MaSuRCA/MaSuRCA-4.1.0.ebuild new file mode 100644 index 000000000..7b070e595 --- /dev/null +++ b/sci-biology/MaSuRCA/MaSuRCA-4.1.0.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore" +HOMEPAGE="http://www.genome.umd.edu/masurca.html + http://bioinformatics.oxfordjournals.org/content/29/21/2669 + https://github.com/alekseyzimin/masurca" +SRC_URI="https://github.com/alekseyzimin/masurca/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="BSD GPL-2 GPL-3" +SLOT="0" +# Known to produce build failure: +# https://github.com/alekseyzimin/masurca/issues/323 +KEYWORDS="" + +DEPEND=" + >=dev-lang/perl-5.8 + app-arch/bzip2 +" +RDEPEND="${DEPEND}" + +src_compile(){ + ./install.sh || die +} +src_install(){ + dobin masurca +} diff --git a/sci-biology/MaSuRCA/Manifest b/sci-biology/MaSuRCA/Manifest index 330ac8de3..fd6029f04 100644 --- a/sci-biology/MaSuRCA/Manifest +++ b/sci-biology/MaSuRCA/Manifest @@ -1 +1,2 @@ DIST MaSuRCA-4.0.1.tar.gz 26502309 BLAKE2B 658c3a85d3d16bc966f50def9b0f98503f25f89893a18f6b7c361592dc2b20875f4c2b78e55e7279e47d0d381e9f973185da7cf7a1529c617c82b0789dea4183 SHA512 5a52dc6667b501ef5ee33f8c30a516a466b39b061ae3bee93f3e6a9cc9dd21503365671d93858165290b3200c859772324fdb12f8bdab235b3ff08c158c4dd66 +DIST MaSuRCA-4.1.0.tar.gz 26532049 BLAKE2B 93cf8cc2bcb4d2c56961f66c0e045ad7776011b4a5f78e5944c5e9b74004c553fc38e542a163aa2efca0aff0e2726fc38eea1aba8f2da287c5154c9eae4e9bcf SHA512 6de57abff87de2fd8c30bcc7efbd6c37358d37eab518d36ccbe48f036af6e1bc22a655abb59f32df613d99c84a5deca272c8c894395f255bcbceb4da5368e64a diff --git a/sci-biology/MaSuRCA/metadata.xml b/sci-biology/MaSuRCA/metadata.xml index 138cb7705..8a631d677 100644 --- a/sci-biology/MaSuRCA/metadata.xml +++ b/sci-biology/MaSuRCA/metadata.xml @@ -9,4 +9,7 @@ <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> </maintainer> + <upstream> + <remote-id type="github">alekseyzimin/masurca</remote-id> + </upstream> </pkgmetadata> |