diff options
Diffstat (limited to 'sci-biology/SOAPdenovo2/files/soapdenovo2.1')
| -rw-r--r-- | sci-biology/SOAPdenovo2/files/soapdenovo2.1 | 22 |
1 files changed, 0 insertions, 22 deletions
diff --git a/sci-biology/SOAPdenovo2/files/soapdenovo2.1 b/sci-biology/SOAPdenovo2/files/soapdenovo2.1 deleted file mode 100644 index 337618ace..000000000 --- a/sci-biology/SOAPdenovo2/files/soapdenovo2.1 +++ /dev/null @@ -1,22 +0,0 @@ -.TH soapdenovo2 1 "February 09, 2013" "version 2.2.3" "USER COMMANDS" -.SH NAME -soapdenovo2 \- Short-read assembly method that can build a de novo draft assembly -.SH SYNOPSIS -.B soapdenovo_63mer soapdenovo_127mer - -.SH Introduction - -SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. - -1) Support large kmer up to 127 to utilize long reads. Three version are provided. - I. The 31mer version support kmer only <=31. - II. The 63mer version support kmer only <=63 and doubles the memory consumption than 31mer version, even being used with kmer <=31. - III. The 127mer version support kmer only <=127 and double the memory consumption than 63mer version, even being used with kmer <=63. - -Please notice that, with longer kmer, the quantity of nodes would decrease significantly, thus the memory consumption is usually smaller than double with shifted version. - -For more information, look at the MANUAL in /usr/share/doc/soapdenovo2 or on soapdenovo web site. - -.SH AUTHOR -Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging - |