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Diffstat (limited to 'sci-biology/STAR/STAR-9999.ebuild')
-rw-r--r-- | sci-biology/STAR/STAR-9999.ebuild | 36 |
1 files changed, 0 insertions, 36 deletions
diff --git a/sci-biology/STAR/STAR-9999.ebuild b/sci-biology/STAR/STAR-9999.ebuild deleted file mode 100644 index 787583b66..000000000 --- a/sci-biology/STAR/STAR-9999.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit git-r3 toolchain-funcs - -DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" -HOMEPAGE="http://code.google.com/p/rna-star/" -EGIT_REPO_URI="https://github.com/alexdobin/STAR.git" -# http://rna-star.googlecode.com/files/STARmanual_2.3.0.1.pdf - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -# contains bundled version sci-biology/htslib-0.0.1 -DEPEND="" -RDEPEND="${DEPEND}" - -# contains bundled STAR-Fusion -src_prepare(){ - sed -e "s/= gcc/= $(tc-getCC)/;s/-O2/${CFLAGS}/g" -i source/htslib/Makefile || die - sed -e "s/-O3/${CFLAGS}/g" -i source/Makefile || die -} - -src_compile(){ - cd source || die - emake STAR -} - -src_install(){ - dobin source/STAR - dodoc doc/STARmanual.pdf -} |