1 files changed, 32 insertions, 0 deletions
diff --git a/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild
new file mode 100644
index 000000000..ecf60c9ad
--- /dev/null
+++ b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit java-pkg-2
+
+MY_PN="VarScan"
+DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., CNA), SNP"
+HOMEPAGE="http://dkoboldt.github.io/varscan"
+
+# binary
+#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar
+#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar"
+SRC_URI="https://github.com/dkoboldt/varscan/blob/master/${MY_PN}.v${PV}.jar?raw=true -> ${MY_PN}.v${PV}.jar"
+
+LICENSE="Non-profit-OSL-3.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="
+	>=virtual/jdk-1.5:*"
+RDEPEND=">=virtual/jre-1.5:*"
+
+S="${WORKDIR}"/net/sf/varscan
+
+src_install(){
+	java-pkg_newjar "${DISTDIR}"/${MY_PN}.v${PV}.jar ${MY_PN}.jar
+	java-pkg_dolauncher VarScan
+}