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Diffstat (limited to 'sci-biology/act-bin/act-bin-13.0.0.ebuild')
| -rw-r--r-- | sci-biology/act-bin/act-bin-13.0.0.ebuild | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/act-bin/act-bin-13.0.0.ebuild b/sci-biology/act-bin/act-bin-13.0.0.ebuild new file mode 100644 index 000000000..debf770c0 --- /dev/null +++ b/sci-biology/act-bin/act-bin-13.0.0.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit java-pkg-2 + +DESCRIPTION="DNA contig sequence comparison tool supplementing Artemis" +HOMEPAGE="http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act" +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/sact_v13.jar + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_v13.jar + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_manual_complete.pdf -> ${P}.manual.pdf + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_html_build.zip -> ${P}.html_build.zip" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + !sci-biology/artemis" +RDEPEND="${DEPEND} + >=virtual/jre-1.6:*" + +S="${WORKDIR}" + +src_unpack(){ + unzip "${DISTDIR}"/${P}.html_build.zip || die +} + +src_prepare(){ + default + cd act_html_build || die + rm -f .DS_Store HTML.index HTML.manifest || die +} + +src_install(){ + java-pkg_dojar "${DISTDIR}"/*.jar + dodoc "${DISTDIR}"/${P}.manual.pdf + insinto /usr/share/doc/"${PN}"/html + doins act_html_build/* +} + +pkg_postinst(){ + einfo "For BAM file support please install sci-biology/BamView" + einfo "You may find interesting the additional web resources:" + einfo "http://www.webact.org/WebACT" + einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html" +} |