1 files changed, 81 insertions, 0 deletions
diff --git a/sci-biology/bioperl/bioperl-1.6.901.ebuild b/sci-biology/bioperl/bioperl-1.6.901.ebuild
new file mode 100644
index 000000000..98d0763c1
--- /dev/null
+++ b/sci-biology/bioperl/bioperl-1.6.901.ebuild
@@ -0,0 +1,81 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 1.3 2009/10/02 14:51:51 weaver Exp $
+
+EAPI="2"
+
+inherit perl-module
+
+SUBPROJECTS="+db +network +run"
+MIN_PV="1.6"
+
+DESCRIPTION="Perl tools for bioinformatics - Core modules"
+HOMEPAGE="http://www.bioperl.org/"
+# SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
+SRC_URI="http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-${PV}.tar.gz"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
+
+CDEPEND=">=perl-core/Module-Build-0.380.0
+	dev-perl/Data-Stag
+	dev-perl/libwww-perl
+	!minimal? (
+		dev-perl/Ace
+		dev-perl/Spreadsheet-ParseExcel
+		dev-perl/Spreadsheet-WriteExcel
+		>=dev-perl/XML-SAX-0.15
+		dev-perl/Graph
+		dev-perl/SOAP-Lite
+		dev-perl/Array-Compare
+		dev-perl/SVG
+		dev-perl/XML-Simple
+		dev-perl/XML-Parser
+		dev-perl/XML-Twig
+		>=dev-perl/HTML-Parser-3.60
+		>=dev-perl/XML-Writer-0.4
+		dev-perl/Clone
+		dev-perl/XML-DOM
+		dev-perl/set-scalar
+		dev-perl/XML-XPath
+		dev-perl/XML-DOM-XPath
+		dev-perl/Algorithm-Munkres
+		dev-perl/Data-Stag
+		dev-perl/Math-Random
+		dev-perl/PostScript
+		dev-perl/Convert-Binary-C
+		dev-perl/SVG-Graph
+		dev-perl/IO-String
+		dev-perl/Class-Inspector
+		dev-perl/Sort-Naturally
+	)
+	graphviz? ( dev-perl/GraphViz )
+	sqlite? ( dev-perl/DBD-SQLite )"
+DEPEND="virtual/perl-Module-Build
+	${CDEPEND}"
+# In perl-overlay
+#	>=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?)
+#	>=perl-CPAN/perl-CPAN-1.81
+RDEPEND="${CDEPEND}"
+PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
+	db? ( >=sci-biology/bioperl-db-${MIN_PV} )
+	network? ( >=sci-biology/bioperl-network-${MIN_PV} )
+	run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
+
+S="${WORKDIR}/BioPerl-${PV}"
+
+src_configure() {
+	sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
+		-e "/'CPAN' *=> *1.81/d" \
+		-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" || die
+
+	if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
+	perl-module_src_configure
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}