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Diffstat (limited to 'sci-biology/biopieces/biopieces-0.51.ebuild')
-rw-r--r--sci-biology/biopieces/biopieces-0.51.ebuild71
1 files changed, 0 insertions, 71 deletions
diff --git a/sci-biology/biopieces/biopieces-0.51.ebuild b/sci-biology/biopieces/biopieces-0.51.ebuild
deleted file mode 100644
index 03a9d78cc..000000000
--- a/sci-biology/biopieces/biopieces-0.51.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-USE_RUBY="ruby22 ruby23 ruby24"
-
-if [ "$PV" == "9999" ]; then
- ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"
- KEYWORDS=""
- inherit subversion
-else
- SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"
- KEYWORDS=""
-fi
-
-inherit ruby-fakegem python-single-r1
-
-DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank"
-HOMEPAGE="http://code.google.com/p/biopieces"
-SRC_URI=""
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="test"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-# Ruby terminal-table ?
-
-CDEPEND="${PYTHON_DEPS}
- >=dev-lang/perl-5.8
- dev-perl/libwww-perl
- dev-perl/Bit-Vector
- dev-perl/Carp-Clan
- dev-perl/Class-Inspector
- dev-perl/DBD-mysql
- dev-perl/DBI
- dev-perl/HTML-Parser
- dev-perl/Inline
- dev-perl/Parse-RecDescent
- dev-perl/SOAP-Lite
- dev-perl/SVG
- dev-perl/TermReadKey
- dev-perl/URI
- dev-perl/XML-Parser
- virtual/perl-version
- virtual/perl-DB_File
- virtual/perl-Time-HiRes"
-
-DEPEND="${CDEPEND}"
-
-ruby_add_bdepend "dev-ruby/RubyInline"
-ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray"
-
-# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict
-# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict
-
-RDEPEND="${CDEPEND}
- sci-biology/ncbi-tools
- sci-biology/muscle
- sci-biology/mummer
- sci-biology/blat
- sci-biology/bowtie
- sci-biology/bwa
- sci-biology/velvet
- sci-biology/Ray
- sci-biology/scan_for_matches
- sci-biology/idba"