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Diffstat (limited to 'sci-biology/biopieces/biopieces-0.51.ebuild')
-rw-r--r-- | sci-biology/biopieces/biopieces-0.51.ebuild | 71 |
1 files changed, 0 insertions, 71 deletions
diff --git a/sci-biology/biopieces/biopieces-0.51.ebuild b/sci-biology/biopieces/biopieces-0.51.ebuild deleted file mode 100644 index 03a9d78cc..000000000 --- a/sci-biology/biopieces/biopieces-0.51.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -USE_RUBY="ruby22 ruby23 ruby24" - -if [ "$PV" == "9999" ]; then - ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk" - KEYWORDS="" - inherit subversion -else - SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh" - KEYWORDS="" -fi - -inherit ruby-fakegem python-single-r1 - -DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" -HOMEPAGE="http://code.google.com/p/biopieces" -SRC_URI="" - -LICENSE="GPL-2" -SLOT="0" -IUSE="test" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -# Ruby terminal-table ? - -CDEPEND="${PYTHON_DEPS} - >=dev-lang/perl-5.8 - dev-perl/libwww-perl - dev-perl/Bit-Vector - dev-perl/Carp-Clan - dev-perl/Class-Inspector - dev-perl/DBD-mysql - dev-perl/DBI - dev-perl/HTML-Parser - dev-perl/Inline - dev-perl/Parse-RecDescent - dev-perl/SOAP-Lite - dev-perl/SVG - dev-perl/TermReadKey - dev-perl/URI - dev-perl/XML-Parser - virtual/perl-version - virtual/perl-DB_File - virtual/perl-Time-HiRes" - -DEPEND="${CDEPEND}" - -ruby_add_bdepend "dev-ruby/RubyInline" -ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray" - -# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict -# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict - -RDEPEND="${CDEPEND} - sci-biology/ncbi-tools - sci-biology/muscle - sci-biology/mummer - sci-biology/blat - sci-biology/bowtie - sci-biology/bwa - sci-biology/velvet - sci-biology/Ray - sci-biology/scan_for_matches - sci-biology/idba" |