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Diffstat (limited to 'sci-biology/biopython/ChangeLog')
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diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog new file mode 100644 index 000000000..baf3b3a19 --- /dev/null +++ b/sci-biology/biopython/ChangeLog @@ -0,0 +1,346 @@ +# ChangeLog for sci-biology/biopython +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.72 2013/09/17 16:07:56 jlec Exp $ + +*biopython-1.62-r1 (25 Sep 2013) + + 25 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +biopython-1.62-r1.ebuild, +files/biopython-1.51-flex.patch, + +files/biopython-1.62-SffIO.patch, +files/SeqRecord.py.patch, + +files/adjust-trimpoints.patch, +metadata.xml: + Upstream accidentally dropped some of my patch chunks while preparing 1.62 + release. Bringing them back myself at least through sci overlay. + +*biopython-1.62 (17 Sep 2013) + + 17 Sep 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62.ebuild: + Version Bump + + 02 Jul 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild: + Fix deps for python + + 06 Jun 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild: + Keyword ~-linux + +*biopython-1.61 (26 Apr 2013) + + 26 Apr 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.61.ebuild, + metadata.xml: + Version Bump + + 14 Dec 2012; Ulrich Müller <ulm@gentoo.org> biopython-1.57.ebuild, + biopython-1.58.ebuild, biopython-1.59.ebuild: + Update LICENSE, HPND according to LICENSE file. + +*biopython-1.59 (27 Feb 2012) + + 27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.59.ebuild: + Version bump + + 26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild: + Version bump + +*biopython-1.58 (26 Dec 2011) + + 26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild: + Version bump + + 23 Jun 2011; Markos Chandras <hwoarang@gentoo.org> -biopython-1.56.ebuild: + Remove old ebuilds. Requested by Arfrever + + 28 May 2011; Brent Baude <ranger@gentoo.org> biopython-1.57.ebuild: + Marking biopython-1.57 ppc for bug 365877 + + 24 May 2011; Markus Meier <maekke@gentoo.org> biopython-1.57.ebuild: + x86 stable, bug #365877 + + 06 May 2011; Justin Lecher <jlec@gentoo.org> biopython-1.56.ebuild, + biopython-1.57.ebuild: + Cleaned DESCRIPTION + + 05 May 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.57.ebuild: + Stable on amd64 wrt bug #365877 + +*biopython-1.57 (03 Apr 2011) + + 03 Apr 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.57.ebuild: + Version bump. + + 30 Jan 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + -biopython-1.55.ebuild: + Delete. + + 30 Jan 2011; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild, + biopython-1.56.ebuild: + Drop alpha/sparc keywords + + 15 Jan 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> + biopython-1.56.ebuild: + x86 stable wrt bug #351498 + + 14 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.56.ebuild: + stable ppc, bug 351498 + + 13 Jan 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.56.ebuild: + Stable on amd64 wrt bug #351498 + + 06 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.55.ebuild: + Marking biopython-1.55 ppc for bug 341519 + +*biopython-1.56 (13 Dec 2010) + + 13 Dec 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + -biopython-1.53.ebuild, -biopython-1.54.ebuild, +biopython-1.56.ebuild: + Version bump. + + 31 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild: + alpha/sparc stable wrt #341519 + + 21 Oct 2010; Thomas Kahle <tomka@gentoo.org> biopython-1.55.ebuild: + x86 stable per bug 341519 + + 19 Oct 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.55.ebuild: + Stable on amd64 wrt bug #341519 + + 15 Oct 2010; Brent Baude <ranger@gentoo.org> biopython-1.54.ebuild: + stable ppc, bug 327151 + + 10 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.54.ebuild: + sparc stable wrt #327151 + +*biopython-1.55 (17 Sep 2010) + + 17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.55.ebuild: + Version bump. + + 12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild: + Stable on alpha, bug #327151 + + 12 Jul 2010; Christian Faulhammer <fauli@gentoo.org> + biopython-1.54.ebuild: + stable x86, bug 327151 + + 06 Jul 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.54.ebuild: + Stable on amd64 wrt bug #327151 + +*biopython-1.54 (05 Jun 2010) + + 05 Jun 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + -biopython-1.49.ebuild, -files/biopython-1.49-flex.patch, + -biopython-1.51.ebuild, -biopython-1.52.ebuild, +biopython-1.54.ebuild: + Version bump. + + 13 Feb 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.53.ebuild: + alpha/sparc stable wrt #301964 + + 07 Feb 2010; Markus Meier <maekke@gentoo.org> biopython-1.53.ebuild: + amd64/x86 stable, bug #301964 + + 24 Jan 2010; Brent Baude <ranger@gentoo.org> biopython-1.53.ebuild: + stable ppc, bug 301964 + +*biopython-1.53 (21 Dec 2009) + + 21 Dec 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.53.ebuild: + Version bump. Set SUPPORT_PYTHON_ABIS. + + 31 Oct 2009; Markus Meier <maekke@gentoo.org> biopython-1.52.ebuild: + amd64/x86 stable, bug #290931 + +*biopython-1.52 (23 Sep 2009) + + 23 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.52.ebuild: + Version bump + +*biopython-1.51 (09 Sep 2009) + + 09 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> + +files/biopython-1.51-flex.patch, +biopython-1.51.ebuild: + Version bump + + 26 Aug 2009; Christian Faulhammer <fauli@gentoo.org> metadata.xml: + remove now unused flag description + + 26 Aug 2009; Christian Faulhammer <fauli@gentoo.org> + -biopython-1.42.ebuild, -files/biopython-1.43-buildkdtree.patch, + -biopython-1.44.ebuild, -files/biopython-1.44-sequtils-complement.patch, + -biopython-1.47.ebuild, -files/biopython-1.47-kdtree.patch: + clean up + + 26 Aug 2009; Tobias Klausmann <klausman@gentoo.org> biopython-1.49.ebuild: + Stable on alpha, bug #277822 + + 02 Aug 2009; nixnut <nixnut@gentoo.org> biopython-1.49.ebuild: + ppc stable #277822 + + 20 Jul 2009; Jeremy Olexa <darkside@gentoo.org> biopython-1.49.ebuild: + amd64 stable, bug 277822 + + 17 Jul 2009; Ferris McCormick <fmccor@gentoo.org> biopython-1.49.ebuild: + Sparc stable --- bug #277822 --- ran tests successfully. + + 14 Jul 2009; Christian Faulhammer <fauli@gentoo.org> + biopython-1.49.ebuild: + stable x86, bug 277822 + + 24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml: + Giving up maintainership of this package. + +*biopython-1.49 (16 Jan 2009) + + 16 Jan 2009; Olivier Fisette <ribosome@gentoo.org> + +files/biopython-1.49-flex.patch, +biopython-1.49.ebuild: + Version bump. Thanks to Juan Aguado <juantxorena@gmail.com> for his work. + Fixes bug #248799. + + 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + + 14 Jul 2008; nixnut <nixnut@gentoo.org> biopython-1.44.ebuild: + Stable on ppc wrt bug 221159 + + 07 Jul 2008; Raúl Porcel <armin76@gentoo.org> biopython-1.44.ebuild: + alpha/sparc/x86 stable wrt #221159 + +*biopython-1.47 (06 Jul 2008) + + 06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> + +files/biopython-1.47-kdtree.patch, +biopython-1.47.ebuild: + New version. Better documentation installation. Added scripts and test + suite. KDTree now enabled by default (requires switching to EAPI 1). + + 06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.44.ebuild: + Stable on amd64. + + 30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.42.ebuild, + biopython-1.44.ebuild: + Q.A.: Quoted variables. + + 30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> -biopython-1.43.ebuild: + Removed buggy version (see bug #202602). + +*biopython-1.44 (30 Jan 2008) + + 30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> + +files/biopython-1.44-sequtils-complement.patch, +biopython-1.44.ebuild: + Fixed six_frame_translations function. Thanks to JTRiley + <justin.t.riley@gmail.com> for his patch. (Fixes bug #202606.) + +*biopython-1.43 (17 May 2007) + + 17 May 2007; Olivier Fisette <ribosome@gentoo.org> + +files/biopython-1.43-buildkdtree.patch, -biopython-1.40b.ebuild, + +biopython-1.43.ebuild: + New upstream version. Ebuild clean-up. Pruned old version. + + 16 May 2007; Raúl Porcel <armin76@gentoo.org> biopython-1.42.ebuild: + alpha stable wrt #153774 + + 05 Nov 2006; Christian Faulhammer <opfer@gentoo.org> + biopython-1.42.ebuild: + stabled x86, bug #153774 + + 03 Nov 2006; <blubb@gentoo.org> biopython-1.42.ebuild: + stable on amd64 + + 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -biopython-1.41.ebuild: + Pruned old version. + + 02 Nov 2006; nixnut <nixnut@gentoo.org> biopython-1.42.ebuild: + Stable on ppc wrt bug 153774 + + 02 Nov 2006; Jason Wever <weeve@gentoo.org> biopython-1.42.ebuild: + Stable on SPARC wrt bug #153774. + + 14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml: + Taking over maintainership. + +*biopython-1.42 (12 Sep 2006) + + 12 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +biopython-1.42.ebuild: + New upstream version. + + 19 Jan 2006; George Shapovalov <george@gentoo.org> +biopython-1.41.ebuild: + new version, cleaned up install + + 30 Aug 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.24.ebuild, + -biopython-1.30.ebuild: + Removed obsolete versions. + + 12 Jun 2005; Bryan Østergaard <kloeri@gentoo.org> biopython-1.40b.ebuild: + Stable on alpha. + + 21 May 2005; Jason Wever <weeve@gentoo.org> biopython-1.40b.ebuild: + Stable on SPARC. + + 13 May 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.10.ebuild, + -biopython-1.21.ebuild, -biopython-1.23.ebuild, biopython-1.40b.ebuild: + Removed obsolete versions. Added 1.40b to x86. + +*biopython-1.40b (19 Feb 2005) + + 19 Feb 2005; Olivier Fisette <ribosome@gentoo.org> + +biopython-1.40b.ebuild: + New version. Should fix bug #82498. + + 29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> : + Change encoding to UTF-8 for GLEP 31 compliance + +*biopython-1.23 (23 Dec 2004) + + 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +biopython-1.10.ebuild, +biopython-1.21.ebuild, +biopython-1.23.ebuild, + +biopython-1.24.ebuild, +biopython-1.30.ebuild: + Moved from app-sci/biopython to sci-biology/biopython. + + 13 Dec 2004; Jason Wever <weeve@gentoo.org> biopython-1.24.ebuild: + Stable on sparc. + +*biopython-1.30 (07 Oct 2004) + + 07 Oct 2004; George Shapovalvo <george@gentoo.org> biopython-1.30.ebuild : + new version (#51833) + amd64 has problems with KDTree, will try to look into this more later + + 05 May 2004; Bryan Østergaard <kloeri@gentoo.org> biopython-1.24.ebuild: + Stable on alpha. + + 03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild: + Marked stable on x86 + +*biopython-1.24 (29 Feb 2004) + + 29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild : + version bump + +*biopython-1.23 (30 Dec 2003) + + 29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.23.ebuild : + marked stable on x86 + + 30 Dec 2003; George Shapovalvo <george@gentoo.org> biopython-1.23.ebuild : + new version, reworked to use distutils. Thanks to + Peter Bienstman <Peter.Bienstman@rug.ac.be> for an update (#35727) + + 02 Sep 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild, + biopython-1.21.ebuild: + moved dev-python/Numeric to dev-python/numeric + +*biopython-1.21 (08 Aug 2003) + + 08 Aug 2003; George Shapovalov <george@gentoo.org> biopython-1.21.ebuild : + new version, added few docs (#25428) + thanks to Daniel Jaeggi <daniel@jaeggi.co.uk> for notification + + 04 Jul 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild: + renamed reportlab dep + +*biopython-1.10 (18 Feb 2003) + + 18 Feb 2003; George Shapovalov <george@gentoo.org> ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 : + initial release (#11617) + Biopython - python module for Computational Moelcular Biology + ebuild submitted by Daniel Jaeggi <daniel@jaeggi.co.uk> |