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Diffstat (limited to 'sci-biology/bismark/bismark-0.23.0.ebuild')
-rw-r--r-- | sci-biology/bismark/bismark-0.23.0.ebuild | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/sci-biology/bismark/bismark-0.23.0.ebuild b/sci-biology/bismark/bismark-0.23.0.ebuild new file mode 100644 index 000000000..121447992 --- /dev/null +++ b/sci-biology/bismark/bismark-0.23.0.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Map bisulfite converted sequence reads and cytosine methylation states" +HOMEPAGE="https://www.bioinformatics.babraham.ac.uk/projects/" +SRC_URI="https://github.com/FelixKrueger/Bismark/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="sci-biology/bowtie" + +S="${WORKDIR}/${P^}" + +src_install() { + dobin \ + bismark{,2bedGraph,2report,_genome_preparation,_methylation_extractor} \ + coverage2cytosine deduplicate_bismark + einstalldocs + dodoc -r Docs +} |