diff options
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-2.3.5-fix-fifo.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-2.3.5-fix-fifo.patch | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-2.3.5-fix-fifo.patch b/sci-biology/bowtie/files/bowtie-2.3.5-fix-fifo.patch new file mode 100644 index 000000000..136bb1e69 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-2.3.5-fix-fifo.patch @@ -0,0 +1,15 @@ +https://github.com/BenLangmead/bowtie2/commit/d7eab7cf6b7e238047044cf61acc662b05c772c4 + +diff --git a/pat.cpp b/pat.cpp +index 453ba69..6d862f8 100644 +--- a/pat.cpp ++++ b/pat.cpp +@@ -494,7 +494,7 @@ void CFilePatternSource::open() { + + is_fifo = S_ISFIFO(st.st_mode) != 0; + #endif +- if (pp_.format != BAM || is_fifo || is_gzipped_file(fd)) { ++ if (pp_.format != BAM && (is_fifo || is_gzipped_file(fd))) { + zfp_ = gzdopen(fd, "r"); + compressed_ = true; + } else { |