diff options
Diffstat (limited to 'sci-biology/bowtie/files')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-2.1.0-buildsystem.patch | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-2.1.0-buildsystem.patch b/sci-biology/bowtie/files/bowtie-2.1.0-buildsystem.patch new file mode 100644 index 000000000..97300b1b0 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-2.1.0-buildsystem.patch @@ -0,0 +1,20 @@ +--- Makefile.old 2013-09-22 12:07:12.606844000 +0200 ++++ Makefile 2013-09-22 13:06:03.113888200 +0200 +@@ -24,8 +24,6 @@ + INC = + GCC_PREFIX = $(shell dirname `which gcc`) + GCC_SUFFIX = +-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX) +-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX) + CXX = $(CPP) + HEADERS = $(wildcard *.h) + BOWTIE_MM = 1 +@@ -141,7 +139,7 @@ + + DEBUG_FLAGS = -O0 -g3 $(BITS_FLAG) $(SSE_FLAG) + DEBUG_DEFS = -DCOMPILER_OPTIONS="\"$(DEBUG_FLAGS) $(EXTRA_FLAGS)\"" +-RELEASE_FLAGS = -O3 $(BITS_FLAG) $(SSE_FLAG) -funroll-loops -g3 ++RELEASE_FLAGS = $(CXXFLAGS) + RELEASE_DEFS = -DCOMPILER_OPTIONS="\"$(RELEASE_FLAGS) $(EXTRA_FLAGS)\"" + NOASSERT_FLAGS = -DNDEBUG + FILE_FLAGS = -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE |