diff options
Diffstat (limited to 'sci-biology/bx-python')
| -rw-r--r-- | sci-biology/bx-python/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/bx-python/bx-python-0.8.9.ebuild | 17 | ||||
| -rw-r--r-- | sci-biology/bx-python/bx-python-0.9.0.ebuild | 35 | ||||
| -rw-r--r-- | sci-biology/bx-python/bx-python-9999.ebuild | 15 | ||||
| -rw-r--r-- | sci-biology/bx-python/metadata.xml | 2 |
5 files changed, 61 insertions, 11 deletions
diff --git a/sci-biology/bx-python/Manifest b/sci-biology/bx-python/Manifest index 80552af85..90147dff7 100644 --- a/sci-biology/bx-python/Manifest +++ b/sci-biology/bx-python/Manifest @@ -1 +1,2 @@ -DIST bx-python-0.8.9.tar.gz 1651514 BLAKE2B ee75d08aaae8102c2af5be0175c75200382e157abc0c0c723a67b55d5542ab2d4b6ccd4e256975b0a2d00b39b2249d73df0c6f4324b3a74757c3e18e2aeb6c1a SHA512 37863c92258dc06a12b566b02697502f68bbf7e4d9decd8fc63af10ee58b614dd0e7cff35e9977ba1ddf913f176c49e7969728d8e64a9f78ac7100da4a3d70ea +DIST bx-python-0.8.9.gh.tar.gz 1651514 BLAKE2B ee75d08aaae8102c2af5be0175c75200382e157abc0c0c723a67b55d5542ab2d4b6ccd4e256975b0a2d00b39b2249d73df0c6f4324b3a74757c3e18e2aeb6c1a SHA512 37863c92258dc06a12b566b02697502f68bbf7e4d9decd8fc63af10ee58b614dd0e7cff35e9977ba1ddf913f176c49e7969728d8e64a9f78ac7100da4a3d70ea +DIST bx-python-0.9.0.gh.tar.gz 1667445 BLAKE2B 0814792a2af8bfb7af5ef5fe1ddc184ed14a68df060a8286f4eba334388497363dc002f6c0de72836b5654452fe28f4cef67cd31b765a4a121c84f3af0634ea0 SHA512 955f396614d8e6d19a74e94a6612f7752a45f752a4a59c95853474dd363ed1960d20a340f17eb1815fda3aaf26d907dc30d37aa8c23608d718742b68864ca1bc diff --git a/sci-biology/bx-python/bx-python-0.8.9.ebuild b/sci-biology/bx-python/bx-python-0.8.9.ebuild index a0d3ae3df..6cffba1be 100644 --- a/sci-biology/bx-python/bx-python-0.8.9.ebuild +++ b/sci-biology/bx-python/bx-python-0.8.9.ebuild @@ -1,28 +1,35 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{10..10} ) inherit distutils-r1 DESCRIPTION="Library for rapid implementation of genome scale analyses" HOMEPAGE="https://github.com/bxlab/bx-python" -SRC_URI="https://github.com/bxlab/bx-python/archive/v${PV}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/bxlab/bx-python/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz" LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" +# Tests require dev-python/pytest-cython (currently not in ::gentoo or ::science) +# (and might need some more work beyond that) +RESTRICT=test RDEPEND=" dev-python/numpy[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}] " -BDEPEND="dev-python/cython[${PYTHON_USEDEP}]" +BDEPEND=" + dev-python/cython[${PYTHON_USEDEP}] +" # has file collision with sci-biology/RSeQC # ToDo: fix doc building: # Reason: TemplateNotFound('i') #distutils_enable_sphinx doc/source + +distutils_enable_tests pytest diff --git a/sci-biology/bx-python/bx-python-0.9.0.ebuild b/sci-biology/bx-python/bx-python-0.9.0.ebuild new file mode 100644 index 000000000..6cffba1be --- /dev/null +++ b/sci-biology/bx-python/bx-python-0.9.0.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..10} ) + +inherit distutils-r1 + +DESCRIPTION="Library for rapid implementation of genome scale analyses" +HOMEPAGE="https://github.com/bxlab/bx-python" +SRC_URI="https://github.com/bxlab/bx-python/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +# Tests require dev-python/pytest-cython (currently not in ::gentoo or ::science) +# (and might need some more work beyond that) +RESTRICT=test + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] +" +BDEPEND=" + dev-python/cython[${PYTHON_USEDEP}] +" + +# has file collision with sci-biology/RSeQC + +# ToDo: fix doc building: +# Reason: TemplateNotFound('i') +#distutils_enable_sphinx doc/source + +distutils_enable_tests pytest diff --git a/sci-biology/bx-python/bx-python-9999.ebuild b/sci-biology/bx-python/bx-python-9999.ebuild index 6f0b1c9ca..b29975b58 100644 --- a/sci-biology/bx-python/bx-python-9999.ebuild +++ b/sci-biology/bx-python/bx-python-9999.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{10..10} ) inherit distutils-r1 git-r3 @@ -14,15 +14,22 @@ EGIT_REPO_URI="https://github.com/bxlab/bx-python" LICENSE="MIT" SLOT="0" KEYWORDS="" +# Tests require dev-python/pytest-cython (currently not in ::gentoo or ::science) +# (and might need some more work beyond that) +RESTRICT=test RDEPEND=" dev-python/numpy[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}] " -BDEPEND="dev-python/cython[${PYTHON_USEDEP}]" +BDEPEND=" + dev-python/cython[${PYTHON_USEDEP}] +" # has file collision with sci-biology/RSeQC # ToDo: fix doc building: # Reason: TemplateNotFound('i') #distutils_enable_sphinx doc/source + +distutils_enable_tests pytest diff --git a/sci-biology/bx-python/metadata.xml b/sci-biology/bx-python/metadata.xml index 3e13342e3..f1fc4360e 100644 --- a/sci-biology/bx-python/metadata.xml +++ b/sci-biology/bx-python/metadata.xml @@ -10,7 +10,7 @@ <name>Gentoo Biology Project</name> </maintainer> <upstream> - <remote-id type="bitbucket">james_taylor/bx-python</remote-id> + <remote-id type="github">bxlab/bx-python</remote-id> <remote-id type="pypi">bx-python</remote-id> </upstream> </pkgmetadata> |