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Diffstat (limited to 'sci-biology/caftools/caftools-2.0.2.ebuild')
-rw-r--r--sci-biology/caftools/caftools-2.0.2.ebuild45
1 files changed, 0 insertions, 45 deletions
diff --git a/sci-biology/caftools/caftools-2.0.2.ebuild b/sci-biology/caftools/caftools-2.0.2.ebuild
deleted file mode 100644
index 7d58f3375..000000000
--- a/sci-biology/caftools/caftools-2.0.2.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="Manipulate CAF files and convert to GAP4 format (not GAP5), ACE, PHRAP"
-HOMEPAGE="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697/"
-SRC_URI="
- ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${P}.tar.gz
- ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${PN}-2.0.tar.gz"
-
-LICENSE="GRL"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
- sci-libs/io_lib
- dev-lang/perl"
-RDEPEND="${DEPEND}"
-
-PATCHES=(
- "${FILESDIR}"/Makefile.in-"${PV}".patch
-)
-
-src_prepare(){
- default
- mv "${WORKDIR}"/caftools-2.0/man/*.{1,5} "${S}"/man/ || die
-}
-
-src_configure(){
- default
- sed \
- -e 's:prefix = /usr:prefix = $(DESTDIR)/usr:' \
- -i Makefile src/Makefile || die
-}
-
-# TODO: the 2.0.2 archive lacks manpages compared to 2.0, FIXME
-# The man/Makefile.in is screwed in 2.0.2 so we cannot use it to install the manpage files,
-# not even copying over whole caftools-2.0/man/ to caftools-2.0.2/man does not help.
-src_install(){
- default
- doman man/*.[1-5] || die
- elog "Some usage info is at http://sarton.imb-jena.de/software/consed2gap/"
- elog "for some reason caf_find_misassemblies is gone from 2.0.2 version"
-}