diff options
Diffstat (limited to 'sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild')
| -rw-r--r-- | sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild | 43 |
1 files changed, 0 insertions, 43 deletions
diff --git a/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild b/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild deleted file mode 100644 index 5135e04ab..000000000 --- a/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 perl-module eutils toolchain-funcs - -DESCRIPTION="CGView Comparison Tool to compare genome sequences graphically (aka CCT)" -HOMEPAGE="https://paulstothard.github.io/cgview_comparison_tool/" -SRC_URI="https://github.com/paulstothard/cgview_comparison_tool/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" - -DEPEND=" - >=dev-lang/perl-5.8.8 - >=sci-biology/ncbi-tools-2.2.15 - >=virtual/jre-1.4.2:* - dev-java/xerces:2 - dev-java/batik - dev-java/commons-lang:2.1 - >=media-gfx/imagemagick-6 - >=sci-biology/bioperl-1.4.0" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/cgview_comparison_tool-${PV}" - -src_install() { - insinto /usr/share/${PN}/scripts - chmod a+x scripts/* # BUG: this does not work - doins -r scripts/* - insinto /usr/share/${PN}/lib/scripts - doins -r lib/scripts/* - echo 'CCT_HOME='${EPREFIX}'/usr/share/cgview' > "${S}/99cgview" - echo 'PATH="$PATH":"'${CCT_HOME}'/scripts"' >> "${S}/99cgview" - doenvd "${S}/99cgview" - perl_set_version - perl_domodule lib/perl_modules/Util/*.pm - # - # Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/batik/svggen/SVGGraphics2DIOException - java-pkg_dojar bin/cgview/cgview.jar -} |