diff options
Diffstat (limited to 'sci-biology/conform-gt/conform-gt-1174.ebuild')
| -rw-r--r-- | sci-biology/conform-gt/conform-gt-1174.ebuild | 24 |
1 files changed, 13 insertions, 11 deletions
diff --git a/sci-biology/conform-gt/conform-gt-1174.ebuild b/sci-biology/conform-gt/conform-gt-1174.ebuild index 507c94c37..edd699ae1 100644 --- a/sci-biology/conform-gt/conform-gt-1174.ebuild +++ b/sci-biology/conform-gt/conform-gt-1174.ebuild @@ -1,21 +1,23 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 + +inherit java-pkg-2 DESCRIPTION="Modify your Variant Call Format file to be consistent with reference VCF" -HOMEPAGE="http://faculty.washington.edu/browning/conform-gt.html" -SRC_URI="http://faculty.washington.edu/browning/conform-gt/conform-gt.r1174.zip" +HOMEPAGE="https://faculty.washington.edu/browning/conform-gt.html" +SRC_URI="https://faculty.washington.edu/browning/conform-gt/conform-gt.24May16.cee.jar" -LICENSE="Apache-2.0" +LICENSE="Apache-2.0 MIT" SLOT="0" -KEYWORDS="" -IUSE="" +KEYWORDS="~amd64 ~x86" -DEPEND="" +DEPEND=">=virtual/jre-1.7:*" RDEPEND="${DEPEND}" -# Some source files in the net.sf.samtools package are licensed under the MIT License. -# http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase1_vcf/ +S="${WORKDIR}" -S="${WORKDIR}"/src +src_install() { + java-pkg_newjar "${DISTDIR}/conform-gt.24May16.cee.jar" "${PN}.jar" +} |