1 files changed, 37 insertions, 0 deletions
diff --git a/sci-biology/deeptools/deeptools-3.5.1.ebuild b/sci-biology/deeptools/deeptools-3.5.1.ebuild
new file mode 100644
index 000000000..7c2eaa739
--- /dev/null
+++ b/sci-biology/deeptools/deeptools-3.5.1.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..11} )
+
+inherit distutils-r1
+
+DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig"
+HOMEPAGE="https://github.com/deeptools/deepTools"
+SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# TODO: fix this
+RESTRICT="test"
+
+RDEPEND="
+	>=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
+	>=dev-python/numpydoc-0.5[${PYTHON_USEDEP}]
+	>=dev-python/scipy-0.17.0[${PYTHON_USEDEP}]
+	dev-python/plotly[${PYTHON_USEDEP}]
+	>=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}]
+	>=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}]
+	>=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}]
+	>=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}]
+"
+
+S="${WORKDIR}/deepTools-${PV}"
+
+distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse
+#distutils_enable_tests nose