diff options
Diffstat (limited to 'sci-biology/deeptools')
| -rw-r--r-- | sci-biology/deeptools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/deeptools/deeptools-3.5.0.ebuild | 15 | ||||
| -rw-r--r-- | sci-biology/deeptools/deeptools-3.5.1.ebuild | 37 |
3 files changed, 46 insertions, 7 deletions
diff --git a/sci-biology/deeptools/Manifest b/sci-biology/deeptools/Manifest index 31a5bdb90..649a31cdf 100644 --- a/sci-biology/deeptools/Manifest +++ b/sci-biology/deeptools/Manifest @@ -1 +1,2 @@ DIST deeptools-3.5.0.tar.gz 62553343 BLAKE2B a8cd1520b96c50ad36667405677cf422a74376d88f0716f83cc0c6f58d01aefcf47ac1b862aa98b8801e61445d59831dbc9246660e2f41a5b3e0ed3d6573ad50 SHA512 699734c8a863ec76dfead728e3227bbe3ec04d62e91f447269a6aa8406d627ff618837b85ab2e31cc635c671e1d62230c4db0992106bbe921281b81164387b38 +DIST deeptools-3.5.1.tar.gz 62552044 BLAKE2B 3c785ba478b88fbbe7ba2617e2d05984b8a897f787e85d6f8f144f596af07b9e16ba920c8adee35efc4b1b067f255e81f66cf746aaea43e5ee61c23c4d15c9c3 SHA512 f7618f1a51b975d42712a38e13e9ab2ddfeafffe24d81fdab41f1ef7c2e44fd09da0351210670b0036bf72e7af11b679417275adce300ae9fabe4b5339ee9810 diff --git a/sci-biology/deeptools/deeptools-3.5.0.ebuild b/sci-biology/deeptools/deeptools-3.5.0.ebuild index f53a19bcb..7c2eaa739 100644 --- a/sci-biology/deeptools/deeptools-3.5.0.ebuild +++ b/sci-biology/deeptools/deeptools-3.5.0.ebuild @@ -1,9 +1,10 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7,8,9} ) +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) inherit distutils-r1 @@ -13,7 +14,7 @@ SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x86" +KEYWORDS="~amd64" # TODO: fix this RESTRICT="test" @@ -23,7 +24,7 @@ RDEPEND=" >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}] >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}] >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}] - >=dev-python/plotly-2.0.0[${PYTHON_USEDEP}] + dev-python/plotly[${PYTHON_USEDEP}] >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}] >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}] >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}] @@ -32,5 +33,5 @@ RDEPEND=" S="${WORKDIR}/deepTools-${PV}" -distutils_enable_sphinx docs dev-python/sphinx_rtd_theme dev-python/sphinx-argparse -distutils_enable_tests nose +distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse +#distutils_enable_tests nose diff --git a/sci-biology/deeptools/deeptools-3.5.1.ebuild b/sci-biology/deeptools/deeptools-3.5.1.ebuild new file mode 100644 index 000000000..7c2eaa739 --- /dev/null +++ b/sci-biology/deeptools/deeptools-3.5.1.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..11} ) + +inherit distutils-r1 + +DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" +HOMEPAGE="https://github.com/deeptools/deepTools" +SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" + +# TODO: fix this +RESTRICT="test" + +RDEPEND=" + >=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}] + >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}] + >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}] + dev-python/plotly[${PYTHON_USEDEP}] + >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}] + >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}] + >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}] + >=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}] +" + +S="${WORKDIR}/deepTools-${PV}" + +distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse +#distutils_enable_tests nose |