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Diffstat (limited to 'sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild')
| -rw-r--r-- | sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild | 34 |
1 files changed, 0 insertions, 34 deletions
diff --git a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild b/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild deleted file mode 100644 index 40bd3b93c..000000000 --- a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds" -HOMEPAGE="http://www.bioinfo.ufpr.br/fgap" -SRC_URI="https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz" -# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371 - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="" - -# Matlab (R2012a) or Octave (3.6.2) -# fag from sci-biology/fgap-bin needs /usr/local/MATLAB/R2012a/bin/glnx86/libmwi18n.so, which comes from MATLAB -# export LD_LIBRARY_PATH= /usr/local/MATLAB/R2012a/bin/glnx86 -# -# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m - -# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz -# http://www.mathworks.com/products/compiler/mcr/index.html -DEPEND="" -RDEPEND="${DEPEND} - sci-biology/ncbi-tools++" -S="${WORKDIR}"/FGAP_1_8_1_LINUX64b - -src_install(){ - dobin run_fgap.sh fgap - dodoc README - insinto /usr/share/"${PN}"/sample_data - doins sample_data/*.fasta -} |