1 files changed, 0 insertions, 79 deletions
diff --git a/sci-biology/gffcompare/files/Makefile.patch b/sci-biology/gffcompare/files/Makefile.patch
deleted file mode 100644
index afb52b2e1..000000000
--- a/sci-biology/gffcompare/files/Makefile.patch
+++ /dev/null
@@ -1,79 +0,0 @@
---- gffcompare-0.10.5/Makefile	2018-06-26 09:24:06.058542487 +0200
-+++ gffcompare-0.10.5/Makefile	2018-06-26 09:28:08.045119603 +0200
-@@ -16,7 +16,7 @@
- endif    
- 
- # CVS checked in
--CC      := g++
-+CXX      ?= g++
- BASEFLAGS  = -Wall -Wextra ${INCDIRS} $(MARCH) \
-  -fno-exceptions -fno-rtti -D_REENTRANT
- 
-@@ -24,7 +24,8 @@
- 
- ifneq (,$(filter %release %static, $(MAKECMDGOALS)))
-   # -- release build
--  CFLAGS = -O3 -DNDEBUG $(BASEFLAGS)
-+  CXXFLAGS ?= -O3 -g
-+  CXXFLAGS += -DNDEBUG $(BASEFLAGS)
-   LDFLAGS = 
-   LIBS = 
-   ifneq (,$(findstring static,$(MAKECMDGOALS)))
-@@ -37,16 +38,16 @@
-      ifeq "$(GCCVER49)" "0"
-        $(error gcc version 4.9 or greater is required for this build target)
-      endif
--     CFLAGS := -fno-omit-frame-pointer -fsanitize=undefined -fsanitize=address
-+     CXXFLAGS += -fno-omit-frame-pointer -fsanitize=undefined -fsanitize=address
-      GCCVER5 := $(shell expr `g++ -dumpversion | cut -f1 -d.` \>= 5)
-      ifeq "$(GCCVER5)" "1"
--       CFLAGS += -fsanitize=bounds -fsanitize=float-divide-by-zero -fsanitize=vptr
--       CFLAGS += -fsanitize=float-cast-overflow -fsanitize=object-size
--       #CFLAGS += -fcheck-pointer-bounds -mmpx
-+       CXXFLAGS += -fsanitize=bounds -fsanitize=float-divide-by-zero -fsanitize=vptr
-+       CXXFLAGS += -fsanitize=float-cast-overflow -fsanitize=object-size
-+       #CXXFLAGS += -fcheck-pointer-bounds -mmpx
-      endif
--     CFLAGS += $(BASEFLAGS)
--     CFLAGS := -g -DDEBUG -D_DEBUG -DGDEBUG -fno-common -fstack-protector $(CFLAGS)
--     LDFLAGS := -g
-+     CXXFLAGS += $(BASEFLAGS)
-+     CXXFLAGS += -DDEBUG -D_DEBUG -DGDEBUG -fno-common -fstack-protector
-+     LDFLAGS ?= -g
-      #LIBS := -Wl,-Bstatic -lasan -lubsan -Wl,-Bdynamic -ldl $(LIBS)
-      LIBS := -lasan -lubsan -ldl $(LIBS)
-   else
-@@ -55,26 +56,26 @@
-     #   GMEMTRACE=1
-     #endif
-     #--- just plain debug build ---
--     CFLAGS = -g -DDEBUG -D_DEBUG -DGDEBUG $(BASEFLAGS)
--     LDFLAGS = -g
-+     CXXFLAGS += -DDEBUG -D_DEBUG -DGDEBUG $(BASEFLAGS)
-+     LDFLAGS += -g
-      LIBS = 
-   endif
- endif
- 
- %.o : %.c
--	${CC} ${CFLAGS} -c $< -o $@
-+	${CXX} ${CXXFLAGS} -c $< -o $@
- 
- %.o : %.cc
--	${CC} ${CFLAGS} -c $< -o $@
-+	${CXX} ${CXXFLAGS} -c $< -o $@
- 
- %.o : %.C
--	${CC} ${CFLAGS} -c $< -o $@
-+	${CXX} ${CXXFLAGS} -c $< -o $@
- 
- %.o : %.cpp
--	${CC} ${CFLAGS} -c $< -o $@
-+	${CXX} ${CXXFLAGS} -c $< -o $@
- 
- %.o : %.cxx
--	${CC} ${CFLAGS} -c $< -o $@
-+	${CXX} ${CXXFLAGS} -c $< -o $@
- 
- # C/C++ linker
-