1 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/gffutils/gffutils-0.11.1.ebuild b/sci-biology/gffutils/gffutils-0.11.1.ebuild
new file mode 100644
index 000000000..8ee8fd4b5
--- /dev/null
+++ b/sci-biology/gffutils/gffutils-0.11.1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+
+inherit distutils-r1
+
+DESCRIPTION="GFF and GTF file manipulation and interconversion"
+HOMEPAGE="https://gffutils.readthedocs.io/en/latest/"
+SRC_URI="https://github.com/daler/gffutils/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+# Nose tests no longer supported, migration on next release
+#RESTRICT="test"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/argh[${PYTHON_USEDEP}]
+	dev-python/argcomplete[${PYTHON_USEDEP}]
+	sci-biology/biopython[${PYTHON_USEDEP}]
+	sci-biology/pybedtools[${PYTHON_USEDEP}]
+	sci-biology/pyfaidx[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+
+python_prepare_all() {
+	if use test; then
+		sed -i -e "s:/tmp/gffutils-test:${T}:g" gffutils/test/test.py || die
+	fi
+	distutils-r1_python_prepare_all
+}
+
+python_test() {
+	distutils_install_for_testing
+	nosetests -v -x --with-doctest -a '!slow' || die
+}