1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/idba/idba-1.1.3.ebuild b/sci-biology/idba/idba-1.1.3.ebuild
new file mode 100644
index 000000000..fb4583346
--- /dev/null
+++ b/sci-biology/idba/idba-1.1.3.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="De novo De Bruijn graph assembler iteratively using multimple k-mers"
+HOMEPAGE="https://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/"
+SRC_URI="https://github.com/loneknightpy/idba/releases/download/${PV}/${P}.tar.gz"
+
+LICENSE="GPL-2+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="openmp"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+pkg_setup() {
+	use openmp && ! tc-has-openmp && die "Please switch to an openmp compatible compiler"
+}
+
+src_prepare(){
+	# Makefile.am also forces '-fopenmp -pthread', do we care?
+	#code stolen from velvet-1.2.10.ebuild
+	if [[ $(tc-getCC) =~ gcc ]]; then
+		local eopenmp=-fopenmp
+	elif [[ $(tc-getCC) =~ icc ]]; then
+		local eopenmp=-openmp
+		sed -e 's/-fopenmp/-openmp/' -i BUILD || die
+	else
+		elog "Cannot detect compiler type so not setting openmp support"
+	fi
+	find . -name Makefile.in | while read f; do \
+		sed -e "s/-Wall -O3//" -i $f || die
+	done || die
+	default
+}