4 files changed, 0 insertions, 97 deletions
diff --git a/sci-biology/jtreeview/Manifest b/sci-biology/jtreeview/Manifest
deleted file mode 100644
index 53e7ff11f..000000000
--- a/sci-biology/jtreeview/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST TreeView-1.1.6r4-src.tar.gz 3148856 BLAKE2B 6d6c4007cb8e6a2245050e64c6b97ab8e28be02159089b3904ed7ba58605933c42ac8ff3dfa792186fb945ab5d1649027cdf6d49eab8c406734af0eaf1de38a8 SHA512 a83962c4c37e3e4536ad549b5e24f69ad9cab8ba67af550d37d16bccef1926ac5b2ddf23a6e95262f02723009a336937fd49bf6786dd983ae26c85d94d78c37d
-DIST helper-scripts-0.0.2.tar.gz 18260 BLAKE2B 2f794063fa2f9263b92465b48a891efc5ae65ab3a64ade7250aa3a9f166873d9a6f9c5ad69387caa6d9f15affb907cd2b3587e7c261b862337319c0e7d7be9d6 SHA512 6d335ffa4da7db2d5b2d0009e8db87145cc9b3b85772059f6afde55f544de1ee1348a8450e69393ea59313268549204be3d26931dc43085d843ff3c6c3c27d88
diff --git a/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild b/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild
deleted file mode 100644
index f1e58af01..000000000
--- a/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit java-pkg-2 java-ant-2 eutils perl-module
-
-S="${WORKDIR}"/TreeView-1.1.6r4-src
-
-DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
-HOMEPAGE="http://jtreeview.sourceforge.net/"
-SRC_URI="
-	http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-src.tar.gz
-	http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz"
-#http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-bin.tar.gz
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="" # resulting java binary does not execute for me
-IUSE=""
-
-DEPEND=">virtual/jdk-1.5:*
-	dev-java/nanoxml"
-RDEPEND="${DEPEND}
-	>=virtual/jre-1.5:*"
-
-# TODO: use xltproc to create docs following TreeView-1.1.6r4-src/doc/README
-
-src_install(){
-	java-pkg_dojar TreeView.jar
-	java-pkg_dolauncher ${PN} TreeView.jar
-	cd ../helper-scripts-0.0.2 || die
-	perl_set_version
-	insinto "${VENDOR_LIB}"
-	doins *.pm
-	dobin *.pl
-	insinto /usr/share/"${PN}"/examples
-	doins blues.color
-	newdoc README README.helper-scripts
-}
diff --git a/sci-biology/jtreeview/jtreeview-9999.ebuild b/sci-biology/jtreeview/jtreeview-9999.ebuild
deleted file mode 100644
index 0d7a1be51..000000000
--- a/sci-biology/jtreeview/jtreeview-9999.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit java-pkg-2 git-r3
-
-DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
-HOMEPAGE="http://jtreeview.sourceforge.net
-	https://bitbucket.org/TreeView3Dev/treeview3"
-EGIT_REPO_URI="https://bitbucket.org/TreeView3Dev/treeview3.git"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="" # builds and executes fines
-IUSE=""
-
-DEPEND=">virtual/jdk-1.7:*"
-RDEPEND="${DEPEND}
-	>=virtual/jre-1.7:*"
-
-src_prepare(){
-	chmod u+x ./gradle* || die
-	eapply_user
-}
-
-src_compile(){
-	# work around gradle writing $HOME/.gradle, requiring $HOME/.git and $HOME/.m2/
-	# https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965
-	# make jure SDK-1.8 is available, JRE-1.8 is not enough
-	GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die
-}
-
-src_install(){
-	cd build/libs || die
-	java-pkg_dojar *.jar
-	java-pkg_dolauncher ${PN}
-}
diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml
deleted file mode 100644
index 5139daeeb..000000000
--- a/sci-biology/jtreeview/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="bitbucket">TreeView3Dev/treeview3</remote-id>
-		<remote-id type="sourceforge">jtreeview</remote-id>
-	</upstream>
-</pkgmetadata>