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Diffstat (limited to 'sci-biology/kmergenie/kmergenie-1.6950.ebuild')
-rw-r--r-- | sci-biology/kmergenie/kmergenie-1.6950.ebuild | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/kmergenie/kmergenie-1.6950.ebuild b/sci-biology/kmergenie/kmergenie-1.6950.ebuild new file mode 100644 index 000000000..91abe4573 --- /dev/null +++ b/sci-biology/kmergenie/kmergenie-1.6950.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils + +PYTHON_COMPAT=( python{2_6,2_7} ) + +DESCRIPTION="Estimate best k-mer length to be used in novo assemblies (default set during compilation is 121)" +HOMEPAGE="http://kmergenie.bx.psu.edu/" +SRC_URI="http://kmergenie.bx.psu.edu/"${P}".tar.gz" + +LICENSE="CeCILL-1.1" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-lang/R" +RDEPEND="${DEPEND}" + +# Type `make` in the KmerGenie directory +# To enable larger values of k, e.g. 200, type `make clean ; make k=200`. +# +# usage: ./kmergenie reads_file + +src_prepare(){ + sed -e 's#-O4##' -i makefile || die +} + +src_compile(){ + make -j 1 || die +} + +src_install(){ + dobin kmergenie + dodoc README + # TODO: install also the python files +} |