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Diffstat (limited to 'sci-biology/kmergenie/kmergenie-1.6971.ebuild')
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diff --git a/sci-biology/kmergenie/kmergenie-1.6971.ebuild b/sci-biology/kmergenie/kmergenie-1.6971.ebuild
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+++ b/sci-biology/kmergenie/kmergenie-1.6971.ebuild
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+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+DESCRIPTION="Estimate best k-mer length to be used in novo assemblies (default set during compilation is 121)"
+HOMEPAGE="http://kmergenie.bx.psu.edu/"
+SRC_URI="http://kmergenie.bx.psu.edu/"${P}".tar.gz"
+
+LICENSE="CeCILL-1.1"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+# dev-python/docopt[${PYTHON_USEDEP}]
+DEPEND="dev-python/docopt
+ dev-lang/R"
+RDEPEND="${DEPEND}"
+
+# Type `make` in the KmerGenie directory
+# To enable larger values of k, e.g. 200, type `make clean ; make k=200`.
+#
+# usage: ./kmergenie reads_file
+
+src_prepare(){
+ sed -e 's#-O4##' -i makefile || die
+ sed -e 's#third_party.##' -i kmergenie || die
+}
+
+src_compile(){
+ make -j 1 || die
+}
+
+src_install(){
+ dobin kmergenie specialk
+ dodoc README
+ # TODO: install also the python files
+}