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Diffstat (limited to 'sci-biology/kraken/kraken-1.1.1-r2.ebuild')
| -rw-r--r-- | sci-biology/kraken/kraken-1.1.1-r2.ebuild | 51 |
1 files changed, 0 insertions, 51 deletions
diff --git a/sci-biology/kraken/kraken-1.1.1-r2.ebuild b/sci-biology/kraken/kraken-1.1.1-r2.ebuild deleted file mode 100644 index 3dd599b83..000000000 --- a/sci-biology/kraken/kraken-1.1.1-r2.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit perl-functions - -DESCRIPTION="Detect sequencing project contaminants by mapping reads to taxonomic groups" -HOMEPAGE="https://ccb.jhu.edu/software/kraken" -SRC_URI="https://github.com/DerrickWood/kraken/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="1" -KEYWORDS="~amd64" - -DEPEND="" -RDEPEND="${DEPEND} - dev-lang/perl - net-misc/wget - sci-biology/jellyfish:1 -" - -src_prepare(){ - default - sed -e 's/^CXX = /CXX ?= /' -e 's/^CXXFLAGS = /CXXFLAGS ?= /' -i src/Makefile || die - echo "exit 0" >> install_kraken.sh || die -} - -src_compile(){ - ./install_kraken.sh destdir || die -} - -src_install(){ - dodoc -r docs - perl_set_version - perl_domodule destdir/*.pm - dosym ../../"${VENDOR_LIB//${EPREFIX/}}/krakenlib.pm" /usr/bin/krakenlib.pm - insinto /usr/share/${PN}/util - doins destdir/*.pl - chmod -R a+rx "${ED}/usr/share/${PN}/util" - rm -f destdir/krakenlib.pm - dobin destdir/* -} - -pkg_postinst(){ - ewarn "Kraken may optionally need <=sci-biology/jellyfish-2 if you want to build your own dbs" - ewarn "Kraken needs high network bandwidth for its huge downloads, be sure to read" - ewarn "https://ccb.jhu.edu/software/kraken and prepare at least 160GB of disk space" - ewarn "Consider placing the db files in ramfs (needs root permissions) taking >75GB RAM" - ewarn "Results can be visualized with https://sourceforge.net/p/krona/home/krona" -} |