1 files changed, 0 insertions, 65 deletions
diff --git a/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild b/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild
deleted file mode 100644
index 8a21f8f36..000000000
--- a/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="IGS-modified version of the genome annotation tool using Chado database schema"
-HOMEPAGE="http://manatee.sourceforge.net/igs" # no https
-SRC_URI="https://downloads.sourceforge.net/project/manatee/igs_manatee/${PV}/manatee-${PV}_linux.tgz"
-
-LICENSE="Artistic-Manatee"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
-	>=dev-libs/expat-1.95.8
-	>=media-libs/gd-2.0.34
-	dev-perl/CGI
-	dev-perl/Bio-DB-Das-Chado
-	dev-perl/DBI
-	dev-perl/DBD-mysql
-	dev-perl/XML-Parser
-	dev-perl/XML-Twig
-	dev-perl/XML-Simple
-	dev-perl/XML-Writer
-	dev-perl/HTML-Template
-	dev-perl/Tree-DAG_Node
-	virtual/perl-File-Spec
-	virtual/perl-Data-Dumper
-	dev-perl/GD
-	dev-perl/GDTextUtil
-	dev-perl/GDGraph
-	virtual/perl-Storable
-	dev-perl/Log-Log4perl
-	dev-perl/Log-Cabin
-	dev-perl/Date-Manip
-	dev-perl/IO-Tee
-	dev-perl/MLDBM
-	dev-perl/JSON
-	dev-perl/JSON-Any
-	sci-biology/bioperl"
-RDEPEND="${DEPEND}
-	>=virtual/mysql-5:*
-	>=www-servers/apache-2.2"
-
-S="${WORKDIR}/manatee-${PV}_linux"
-
-src_prepare(){
-	default
-	find "${S}" -name \*.cgi | while read f; do sed -e 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' -i $f; done
-	find "${S}" -name \*.pl | while read f; do sed -e 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' -i $f; done
-	find "${S}" -name \*.pm | while read f; do sed -e 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' -i $f; done
-}
-
-src_install(){
-	dodir /var/www/localhost/cgi-bin
-	cp -r src/cgi-bin/chado_prok_manatee "${D}"/var/www/localhost/cgi-bin
-	dodir /var/www/localhost/htdocs/manatee
-	cp -r src/htdocs/tdb "${D}"/var/www/localhost/htdocs/manatee
-
-	einfo "Please read the "${S}"/databases/Makefile.PL and import the databases into your MySQL database"
-
-	einfo "You have to fetch the 1.1 GB large file from https://sourceforge.net/projects/manatee/files/igs_manatee/"${PV}"/lookups-"${PV}"_linux.tgz"
-	einfo "You need to update it regularly."
-	einfo "Also fetch https://sourceforge.net/projects/manatee/files/igs_manatee/"${PV}"/blastdb-"${PV}".tgz (about 2MB in size)"
-}