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Diffstat (limited to 'sci-biology/minimap2/minimap2-2.24.ebuild')
-rw-r--r--sci-biology/minimap2/minimap2-2.24.ebuild63
1 files changed, 63 insertions, 0 deletions
diff --git a/sci-biology/minimap2/minimap2-2.24.ebuild b/sci-biology/minimap2/minimap2-2.24.ebuild
new file mode 100644
index 000000000..6934f2a74
--- /dev/null
+++ b/sci-biology/minimap2/minimap2-2.24.ebuild
@@ -0,0 +1,63 @@
+# Copyright 2021-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_10 )
+DISTUTILS_OPTIONAL=1
+inherit distutils-r1
+
+DESCRIPTION="splice-aware sequence aligner with SSE2 and SSE4.1"
+HOMEPAGE="https://github.com/lh3/minimap2"
+SRC_URI="https://github.com/lh3/${PN}/releases/download/v${PV}/${P}.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="python cpu_flags_x86_sse4_1"
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+DEPEND="sys-libs/zlib
+ python? (
+ ${PYTHON_DEPS}
+ )"
+RDEPEND="${DEPEND}"
+BDEPEND="python? ( dev-python/cython[${PYTHON_USEDEP}] )"
+
+src_prepare(){
+ sed -e 's/-O2 //' -e 's/^CFLAGS=/CFLAGS+=/' -i Makefile || die
+ if ! use cpu_flags_x86_sse4_1; then
+ sed -i -e "/extra_compile_args.append('-msse4.1')/d" setup.py || die
+ fi
+ if use python; then
+ distutils-r1_src_prepare
+ fi
+ default
+}
+
+src_configure() {
+ if use python; then
+ distutils-r1_src_configure
+ fi
+ default
+}
+
+src_compile() {
+ if use python; then
+ distutils-r1_src_compile
+ fi
+ default
+}
+
+src_install() {
+ if use python; then
+ distutils-r1_src_install
+ fi
+ dobin "${PN}"
+ insinto /usr/include
+ doins minimap.h mmpriv.h
+ insinto /usr/share/"${PN}"/examples
+ doins example.c
+ doman minimap2.1
+ einstalldocs
+}