diff options
Diffstat (limited to 'sci-biology/mummer')
| -rw-r--r-- | sci-biology/mummer/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/mummer/Manifest | 16 | ||||
| -rw-r--r-- | sci-biology/mummer/files/digest-mummer-3.19 | 3 | ||||
| -rw-r--r-- | sci-biology/mummer/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/mummer/mummer-3.19.ebuild | 48 |
5 files changed, 0 insertions, 83 deletions
diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog deleted file mode 100644 index b0bc8509d..000000000 --- a/sci-biology/mummer/ChangeLog +++ /dev/null @@ -1,11 +0,0 @@ -# ChangeLog for sci-biology/mummer -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +mummer-3.19.ebuild: - Mass import from sunrise - - 07 Mar 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +mummer-3.19.ebuild, - +metadata.xml: - New package, Bug 169793 - diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest deleted file mode 100644 index 094924a8a..000000000 --- a/sci-biology/mummer/Manifest +++ /dev/null @@ -1,16 +0,0 @@ -DIST MUMmer3.19.tar.gz 3141991 RMD160 54f3c692efb8bde7762c48186919754f2a8c178c SHA1 8906bab6bd43b307461de8b5f44122a115799533 SHA256 c590264e0def7de9259083de085f589ea39dc729d7f491790340b6b0abf3d6ab -EBUILD mummer-3.19.ebuild 1462 RMD160 5f8b0b879579bbb191e127ff8502cf85ad24a1d6 SHA1 4fe7b3203592abf4fef23576225389304983102a SHA256 a4b07705f9363862d0a22418b3afbf90a1170653b3417f6217d69febf0ea70a5 -MD5 6e44430e8985e9ae0c49344af52c4d8d mummer-3.19.ebuild 1462 -RMD160 5f8b0b879579bbb191e127ff8502cf85ad24a1d6 mummer-3.19.ebuild 1462 -SHA256 a4b07705f9363862d0a22418b3afbf90a1170653b3417f6217d69febf0ea70a5 mummer-3.19.ebuild 1462 -MISC ChangeLog 341 RMD160 3af940375849fd821b9a26f495ec4dfe0d0e43d2 SHA1 343e404673256e84eaa87aab34f23c2fd0e10677 SHA256 fba592d098848186f7e54967015b44ca01753a11251c505add0bd83d361364eb -MD5 583803d6dae0bbc9e2aa180ea0886f9a ChangeLog 341 -RMD160 3af940375849fd821b9a26f495ec4dfe0d0e43d2 ChangeLog 341 -SHA256 fba592d098848186f7e54967015b44ca01753a11251c505add0bd83d361364eb ChangeLog 341 -MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 -MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170 -RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170 -SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170 -MD5 aecc1fc23d65ba16769fc4b9cd7661f1 files/digest-mummer-3.19 235 -RMD160 579c3b585978eb4b23bdb2029556279eb7b7f1a7 files/digest-mummer-3.19 235 -SHA256 03a7db30ce80070d11adee5be808e1752dccd73cbffc5b73c4b131430b63ecc3 files/digest-mummer-3.19 235 diff --git a/sci-biology/mummer/files/digest-mummer-3.19 b/sci-biology/mummer/files/digest-mummer-3.19 deleted file mode 100644 index 52ef1125f..000000000 --- a/sci-biology/mummer/files/digest-mummer-3.19 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 7e0aa1c7da68c31b66fda9687171d9ff MUMmer3.19.tar.gz 3141991 -RMD160 54f3c692efb8bde7762c48186919754f2a8c178c MUMmer3.19.tar.gz 3141991 -SHA256 c590264e0def7de9259083de085f589ea39dc729d7f491790340b6b0abf3d6ab MUMmer3.19.tar.gz 3141991 diff --git a/sci-biology/mummer/metadata.xml b/sci-biology/mummer/metadata.xml deleted file mode 100644 index 7e3286984..000000000 --- a/sci-biology/mummer/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>maintainer-wanted</herd> -</pkgmetadata> diff --git a/sci-biology/mummer/mummer-3.19.ebuild b/sci-biology/mummer/mummer-3.19.ebuild deleted file mode 100644 index a6b3e4c0c..000000000 --- a/sci-biology/mummer/mummer-3.19.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -MY_P=MUMmer${PV} -DESCRIPTION="A rapid whole genome aligner" -HOMEPAGE="http://mummer.sourceforge.net/" -SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="doc" -KEYWORDS="~x86" - -DEPEND="" -RDEPEND="" - -S=${WORKDIR}/${MY_P} - -src_compile() { - emake || die "emake failed" - - sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ - -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ - -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ - -e 's|\(set bindir = \).*|\1/usr/bin|' \ - -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ - -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ - scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths" - sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh -} - -src_install() { - dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \ - exact-tandems promer repeat-match show-aligns gaps mummer \ - show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* - newbin annotate mummer-annotate - - dodir /usr/share/${PN}/{lib,scripts} - insinto /usr/share/${PN}/scripts - doins scripts/{*.awk,*.csh,*.pl} - insinto /usr/share/${PN}/lib - doins scripts/Foundation.pm - - dodoc ACKNOWLEDGEMENTS ChangeLog README - insinto /usr/share/doc/${PF} - use doc && doins -r docs -} |