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path: root/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
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Diffstat (limited to 'sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch')
-rw-r--r--sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch130
1 files changed, 0 insertions, 130 deletions
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
deleted file mode 100644
index e9dd1f710..000000000
--- a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-apps-blast-linking.patch
+++ /dev/null
@@ -1,130 +0,0 @@
-Index: c++.18.0.0/src/app/blast/Makefile.blast_formatter.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.blast_formatter.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.blast_formatter.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = blast_formatter
- SRC = blast_formatter
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.blastp.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.blastp.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.blastp.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = blastp
- SRC = blastp_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.blastx.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.blastx.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.blastx.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = blastx
- SRC = blastx_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.deltablast.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.deltablast.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.deltablast.app (working copy)
-@@ -1,7 +1,7 @@
-
- APP = deltablast
- SRC = deltablast_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.psiblast.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.psiblast.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.psiblast.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = psiblast
- SRC = psiblast_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.rpsblast.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.rpsblast.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.rpsblast.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = rpsblast
- SRC = rpsblast_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.rpstblastn.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.rpstblastn.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.rpstblastn.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = rpstblastn
- SRC = rpstblastn_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.seedtop.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.seedtop.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.seedtop.app (working copy)
-@@ -2,7 +2,7 @@
-
- APP = seedtop
- SRC = seedtop_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.tblastn.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.tblastn.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.tblastn.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = tblastn
- SRC = tblastn_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation
-Index: c++.18.0.0/src/app/blast/Makefile.tblastx.app
-===================================================================
---- c++.18.0.0/src/app/blast/Makefile.tblastx.app (revision 523253)
-+++ c++.18.0.0/src/app/blast/Makefile.tblastx.app (working copy)
-@@ -4,7 +4,7 @@
-
- APP = tblastx
- SRC = tblastx_app
--LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) $(OBJMGR_LIBS)
-+LIB_ = $(BLAST_INPUT_LIBS) $(BLAST_LIBS) xregexp $(PCRE_LIB) $(OBJMGR_LIBS)
- LIB = blast_app_util $(LIB_:%=%$(STATIC))
-
- # De-universalize Mac builds to work around a PPC toolchain limitation