1 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/ngs/ngs-2.11.2.ebuild b/sci-biology/ngs/ngs-2.11.2.ebuild
new file mode 100644
index 000000000..0574c5076
--- /dev/null
+++ b/sci-biology/ngs/ngs-2.11.2.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_10 )
+inherit python-single-r1 java-pkg-2
+
+DESCRIPTION="NGS Language Bindings "
+HOMEPAGE="https://github.com/ncbi/ngs"
+SRC_URI="https://github.com/ncbi/ngs/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64"
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+DEPEND="${PYTHON_DEPS}
+	sci-biology/bamtools
+	virtual/jdk:1.8
+"
+RDEPEND="${DEPEND}
+	virtual/jre:1.8
+"
+
+src_configure() {
+	# this is some non-standard configure script
+	./configure || die
+}
+
+src_install() {
+	dodir /usr/include
+	dodir /etc/profile.d
+	# Hard way around hard coded paths
+	find . -type f -exec sed -i \
+		-e "s:/usr/local:${ED}/usr:g" \
+		-e "s:/etc:${ED}/etc:g" \
+		-e "s:/usr/lib:${ED}/usr/lib:g" \
+		-e "s:/usr/include:${ED}/usr/include:g" \
+		-e "s:setup.py -q install:setup.py install --root="${D}":g" \
+		{} \; || die
+	default
+}