diff options
Diffstat (limited to 'sci-biology/pbbam')
| -rw-r--r-- | sci-biology/pbbam/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/pbbam/metadata.xml | 3 | ||||
| -rw-r--r-- | sci-biology/pbbam/pbbam-2.1.0.ebuild (renamed from sci-biology/pbbam/pbbam-1.6.0.ebuild) | 7 | ||||
| -rw-r--r-- | sci-biology/pbbam/pbbam-9999.ebuild | 26 |
4 files changed, 8 insertions, 30 deletions
diff --git a/sci-biology/pbbam/Manifest b/sci-biology/pbbam/Manifest index 28d1a1423..1bb2b2625 100644 --- a/sci-biology/pbbam/Manifest +++ b/sci-biology/pbbam/Manifest @@ -1 +1 @@ -DIST pbbam-1.6.0.tar.gz 11037740 BLAKE2B 72bd0b7b427dd9704095c0a5b1763aaf320438b4cbb394cc85fe13b8c2a678191dc55112869fa87a87426e44ce02c492b49f6ef9226331ac2ca379b4f4968c96 SHA512 5d07184aba0dd3873a769376174b5558071c1dbcd8ad140c7c9a9f58cd3825763d3050b971358be0e4916aa8b2b41ee51dc0bf063a78976a92c520b2d40f633f +DIST pbbam-2.1.0.tar.gz 10405332 BLAKE2B c91122afcc8fae747fbf1e40274aeb7f2fbc5a02789945798899c6ae87ff01beaae994a80a356a71a788e8626ee5a3595537d8bd6468ac30a874733fa9e9d883 SHA512 5f606620d1a6eb7c31c36db4d6fd125e397c4b81d9f695dc8756535074ce98c4b05e04d86077ed33e0ba1e503e766b1b59e08bb73e8f8129af7789024f308094 diff --git a/sci-biology/pbbam/metadata.xml b/sci-biology/pbbam/metadata.xml index 138cb7705..e12f3579e 100644 --- a/sci-biology/pbbam/metadata.xml +++ b/sci-biology/pbbam/metadata.xml @@ -9,4 +9,7 @@ <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> </maintainer> + <upstream> + <remote-id type="github">PacificBiosciences/pbbam</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/pbbam/pbbam-1.6.0.ebuild b/sci-biology/pbbam/pbbam-2.1.0.ebuild index 98f0089e3..a114da0fc 100644 --- a/sci-biology/pbbam/pbbam-1.6.0.ebuild +++ b/sci-biology/pbbam/pbbam-2.1.0.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 inherit meson @@ -20,7 +20,8 @@ BDEPEND=" " DEPEND=" sci-biology/pbcopper + sci-biology/samtools:0 >=sci-libs/htslib-1.3.1:= - >=dev-libs/boost-1.55:=[threads] + >=dev-libs/boost-1.55:= " RDEPEND="${DEPEND}" diff --git a/sci-biology/pbbam/pbbam-9999.ebuild b/sci-biology/pbbam/pbbam-9999.ebuild deleted file mode 100644 index 1f03ab1a9..000000000 --- a/sci-biology/pbbam/pbbam-9999.ebuild +++ /dev/null @@ -1,26 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit git-r3 meson - -DESCRIPTION="PacBio modified BAM file format" -HOMEPAGE="https://pbbam.readthedocs.io/en/latest/index.html" -EGIT_REPO_URI="https://github.com/PacificBiosciences/pbbam.git" - -LICENSE="blasr" -SLOT="0" -KEYWORDS="" - -BDEPEND=" - virtual/pkgconfig - >=dev-cpp/gtest-1.8.1 - >=dev-lang/swig-3.0.5 -" -DEPEND=" - sci-biology/pbcopper - >=sci-libs/htslib-1.3.1:= - >=dev-libs/boost-1.55:=[threads] -" -RDEPEND="${DEPEND}" |