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Diffstat (limited to 'sci-biology/prokka/prokka-1.14.6.ebuild')
-rw-r--r--sci-biology/prokka/prokka-1.14.6.ebuild36
1 files changed, 0 insertions, 36 deletions
diff --git a/sci-biology/prokka/prokka-1.14.6.ebuild b/sci-biology/prokka/prokka-1.14.6.ebuild
deleted file mode 100644
index b56fd143f..000000000
--- a/sci-biology/prokka/prokka-1.14.6.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="Prokaryotic whole genome annotation pipeline"
-HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml"
-SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RDEPEND="
- sys-process/parallel
- sci-biology/bioperl
- sci-biology/prodigal
- || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
- sci-biology/hmmer:*
- sci-biology/infernal
- sci-biology/exonerate
- sci-biology/barrnap"
-DEPEND="${RDEPEND}"
-# sci-biology/minced
-# >=sci-biolohy/hmmer-3.1
-# Aragorn
-# >=RNAmmer-1.2
-# >=HMMmmer-2.0 (that is not sci-biology/hmmer)
-# SignalP >= 3.0
-# sequin
-# tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz
-
-src_install() {
- default
- dobin bin/prokka
-}