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Diffstat (limited to 'sci-biology/prokka/prokka-1.14.6.ebuild')
-rw-r--r-- | sci-biology/prokka/prokka-1.14.6.ebuild | 36 |
1 files changed, 0 insertions, 36 deletions
diff --git a/sci-biology/prokka/prokka-1.14.6.ebuild b/sci-biology/prokka/prokka-1.14.6.ebuild deleted file mode 100644 index b56fd143f..000000000 --- a/sci-biology/prokka/prokka-1.14.6.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prokaryotic whole genome annotation pipeline" -HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml" -SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - sys-process/parallel - sci-biology/bioperl - sci-biology/prodigal - || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) - sci-biology/hmmer:* - sci-biology/infernal - sci-biology/exonerate - sci-biology/barrnap" -DEPEND="${RDEPEND}" -# sci-biology/minced -# >=sci-biolohy/hmmer-3.1 -# Aragorn -# >=RNAmmer-1.2 -# >=HMMmmer-2.0 (that is not sci-biology/hmmer) -# SignalP >= 3.0 -# sequin -# tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz - -src_install() { - default - dobin bin/prokka -} |