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Diffstat (limited to 'sci-biology/pybedtools/pybedtools-0.8.0.ebuild')
| -rw-r--r-- | sci-biology/pybedtools/pybedtools-0.8.0.ebuild | 45 |
1 files changed, 0 insertions, 45 deletions
diff --git a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild deleted file mode 100644 index 6d391b0a8..000000000 --- a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild +++ /dev/null @@ -1,45 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) - -inherit distutils-r1 - -DESCRIPTION="Use BED and GFF files from python using BEDtools" -HOMEPAGE="https://daler.github.io/pybedtools" -SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="minimal" -RESTRICT="test" -# Tests reported to fail on Gentoo: -# https://github.com/daler/pybedtools/issues/329 - -# see requirements.txt -RDEPEND=" - sci-biology/bedtools - sci-biology/pysam - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - !minimal? ( sci-libs/htslib )" -# optional-requirements.txt also lists: -# ucsc-bigwigtobedgraph -# ucsc-bedgraphtobigwig -# ucsc-wigtobigwig -BDEPEND="${RDEPEND} - dev-python/cython[${PYTHON_USEDEP}]" - -# ToDo: fix docs building -# ModuleNotFoundError: No module named 'pybedtools.cbedtools' -# even if pybedtools is installed -#distutils_enable_sphinx docs/source -distutils_enable_tests pytest - -src_compile(){ - python setup.py cythonize - distutils-r1_src_compile -} |