diff options
Diffstat (limited to 'sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild')
| -rw-r--r-- | sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild b/sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild new file mode 100644 index 000000000..d3ff1ce82 --- /dev/null +++ b/sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit versionator + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA" +HOMEPAGE="http://repeatmasker.org/" +SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz" + +LICENSE="OSL-2.1" +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +DEPEND="" +RDEPEND="sci-biology/phrap + sci-biology/repeatmasker-libraries" + +S="${WORKDIR}/RepeatMasker" + +src_compile() { + sed -i 's/system( "clear" );//' "${S}/configure" + cat << END | "${S}/configure" || die "configure failed" + +/usr/bin +/usr/share/${PN} +1 +/usr/bin +Y +4 +END + sed -i '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}/RepeatMaskerConfig.pm" || die "sed failed" + sed -i 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker} || die "sed failed" +} + +src_install() { + dobin DateRepeats ProcessRepeats RepeatMasker + + dodir /usr/share/${PN}/lib + insinto /usr/share/${PN}/lib + doins "${S}"/*.pm + + insinto /usr/share/${PN} + doins -r util Matrices + keepdir /usr/share/${PN}/Libraries + + dodoc README INSTALL repeatmasker.help daterepeats.help +} |