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-rw-r--r--sci-biology/repeatmasker/Manifest2
-rw-r--r--sci-biology/repeatmasker/files/repeatmasker-4.0.6__configure.patch106
-rw-r--r--sci-biology/repeatmasker/files/repeatmasker-4.0.8__configure.patch118
-rw-r--r--sci-biology/repeatmasker/metadata.xml8
-rw-r--r--sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild111
-rw-r--r--sci-biology/repeatmasker/repeatmasker-4.0.8-r1.ebuild111
6 files changed, 0 insertions, 456 deletions
diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest
deleted file mode 100644
index fce5af28f..000000000
--- a/sci-biology/repeatmasker/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST RepeatMasker-open-4-0-6.tar.gz 266192837 BLAKE2B 1c46cb8dfa48a42093b72b3e61aba2a8c566617ca049064224b4fe8a080a6f75ff2e01d2f53cd9d26e5dfe39aaa8596b051fb1f2ff8dcdc74bab3a574b33f16a SHA512 3ca3593a736ab3741c01cfc79e6bdce0ff069cdd12e7e98864b4feeabf93422247aebaf0305d2121b99fd08166be2f7cc443080a2966331dc7f4c45b800a8a97
-DIST RepeatMasker-open-4-0-8.tar.gz 284258491 BLAKE2B 3a01fa951b4ac285ea5313b2c7dc679b22e265ab6475bc7a0eedbe87eb1c372b02fccd12b3b857ca47ba5d11ed0faa6a6c051ce52abc8f4cd4ab34a2c34a26f9 SHA512 7517bad308c331d2b6b4dbb65d4d425983da2e335fcf19ea4ff1e4618668adf7b5941ecf6f1e65205b307dbd0b67e1feb4b03a27a93abe2346f40d0fc443217a
diff --git a/sci-biology/repeatmasker/files/repeatmasker-4.0.6__configure.patch b/sci-biology/repeatmasker/files/repeatmasker-4.0.6__configure.patch
deleted file mode 100644
index e4042190f..000000000
--- a/sci-biology/repeatmasker/files/repeatmasker-4.0.6__configure.patch
+++ /dev/null
@@ -1,106 +0,0 @@
---- configure.ori 2015-11-24 20:56:46.000000000 +0100
-+++ configure 2015-11-24 20:59:58.000000000 +0100
-@@ -253,17 +253,16 @@
- close INVERS;
- }
- else {
-- print "\nYour RepeatMasker installation is missing a library file.\n"
-+ die "\nYour RepeatMasker installation is missing a library file.\n"
- . "RepeatMasker requires a minimal set of library sequences to run\n"
- . "properly. Please check that all files were extracted from the\n"
- . "distribution before re-running the configure program.\n\n";
-- exit;
- }
-
- print "\n -- Building monolithic RM database...";
- system(
- "$rmLocation/util/buildRMLibFromEMBL.pl $rmLocation/Libraries/RepeatMaskerLib.embl > $rmLocation/Libraries/RepeatMasker.lib 2>/dev/null"
--);
-+) and die "$rmLocation/util/buildRMLibFromEMBL.pl $rmLocation/Libraries/RepeatMaskerLib.embl command filed with: $!";
-
- ##
- ## TRF location
-@@ -475,7 +474,7 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
- }
-
- }
-@@ -607,15 +606,15 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "Faled to mv $configFile.tmp $configFile: $!";
-
- # Freeze RM and RMPep libraries for RepeatModeler use among others
- my $rmLocation = "$FindBin::Bin";
- print "Building RMBlast frozen libraries..\n";
- system( "$pgLocation/makeblastdb -dbtype nucl -in "
-- . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" ) and die "$pgLocation/makeblastdb -dbtype nucl -in $rmLocation/Libraries/RepeatMasker.lib failed: $!";
- system( "$pgLocation/makeblastdb -dbtype prot -in "
-- . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" ) and die "$pgLocation/makeblastdb -dbtype prot -in $rmLocation/Libraries/RepeatPeps.lib failed with: $!";
-
- my $pgDefault = &promptScreen(
- "",
-@@ -682,15 +681,15 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
-
- # Freeze RM and RMPep libraries
- my $rmLocation = "$FindBin::Bin";
- print "Building WUBlast/ABBlast frozen libraries..\n";
- system( "$wuLocation/xdformat -n -I "
-- . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" ) and die "$wuLocation/xdformat -n -I $rmLocation/Libraries/RepeatMasker.lib failed with: $!";
- system( "$wuLocation/xdformat -p -I "
-- . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" ) and die "$wuLocation/xdformat -p -I $rmLocation/Libraries/RepeatPeps.lib failed with: $!";
-
- my $wuDefault = &promptScreen(
- "",
-@@ -756,7 +755,7 @@
- }
- }
- else {
-- print "ERROR: Could not find nhmmer program in this directory!\n";
-+ print "ERROR: Could not find nhmmer program in '$location' directory!\n";
- }
- }
-
-@@ -776,7 +775,7 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
-
- my $default = &promptScreen(
- "",
-@@ -830,7 +829,7 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
-
- my $deDefault = &promptScreen(
- "",
-@@ -866,9 +865,6 @@
-
- my $answer = undef;
-
-- # Clear the screen
-- system( "clear" );
--
- print "\n\n\n";
- print $screenText;
- my $numLines = ( $screenText =~ s/(\n)/$1/g );
diff --git a/sci-biology/repeatmasker/files/repeatmasker-4.0.8__configure.patch b/sci-biology/repeatmasker/files/repeatmasker-4.0.8__configure.patch
deleted file mode 100644
index 728bb75b1..000000000
--- a/sci-biology/repeatmasker/files/repeatmasker-4.0.8__configure.patch
+++ /dev/null
@@ -1,118 +0,0 @@
---- RepeatMasker/configure.ori 2018-11-30 16:50:39.918872258 +0100
-+++ RepeatMasker/configure 2018-11-30 17:00:33.255400144 +0100
-@@ -78,11 +78,10 @@
- ## unqualified from another installation directory.
- ##
- if ( cwd() ne $FindBin::RealBin ) {
-- print "\n The RepeatMasker configure script must be run from\n"
-+ die "\n The RepeatMasker configure script must be run from\n"
- . " inside the RepeatMasker installation directory:\n\n"
- . " $FindBin::RealBin\n\n"
- . " Perhaps this is not the \"configure\" you are looking for?\n\n";
-- exit;
- }
-
- ##
-@@ -228,12 +227,12 @@
- print "\n -- Building FASTA database...";
- system(
- "$rmLocation/util/buildRMLibFromEMBL.pl $rmLocation/Libraries/RepeatMaskerLib.embl > $rmLocation/Libraries/RepeatMasker.lib 2>/dev/null"
--);
-+) and die "$rmLocation/util/buildRMLibFromEMBL.pl $rmLocation/Libraries/RepeatMaskerLib.embl command filed with: $!";
-
- ## Uncompress taxonomy.dat
- if ( -s "$rmLocation/Libraries/taxonomy.dat.gz" ) {
- print "\n -- Uncompressing taxonomy.dat...";
-- system( "gunzip $rmLocation/Libraries/taxonomy.dat.gz" );
-+ system( "gunzip $rmLocation/Libraries/taxonomy.dat.gz" ) and die "gunzip $rmLocation/Libraries/taxonomy.dat.gz failed with: $!";
- }
-
- ##
-@@ -278,7 +277,7 @@
- } while ( $goodParam != 1 );
-
- # Initialize config from template.
--system( "cp RepeatMaskerConfig.tmpl RepeatMaskerConfig.pm" );
-+system( "cp RepeatMaskerConfig.tmpl RepeatMaskerConfig.pm" ) and die "cp RepeatMaskerConfig.tmpl RepeatMaskerConfig.pm failed with: $!";
-
- # Make changes to file.
- my $configFile = "RepeatMaskerConfig.pm";
-@@ -290,7 +289,7 @@
- }
- close IN;
- close OUT;
--system( "mv $configFile.tmp $configFile" );
-+system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
-
- ##
- ## Search Engine Configuration
-@@ -452,7 +451,7 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
- }
-
- }
-@@ -590,9 +589,9 @@
- my $rmLocation = "$FindBin::Bin";
- print "Building RMBlast frozen libraries..\n";
- system( "$pgLocation/makeblastdb -dbtype nucl -in "
-- . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" ) and die "$pgLocation/makeblastdb -dbtype nucl -in $rmLocation/Libraries/RepeatMasker.lib failed: $!";
- system( "$pgLocation/makeblastdb -dbtype prot -in "
-- . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" ) and die "$pgLocation/makeblastdb -dbtype prot -in $rmLocation/Libraries/RepeatPeps.lib failed with: $!";
-
- my $pgDefault = &promptScreen(
- "",
-@@ -665,9 +664,9 @@
- my $rmLocation = "$FindBin::Bin";
- print "Building WUBlast/ABBlast frozen libraries..\n";
- system( "$wuLocation/xdformat -n -I "
-- . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatMasker.lib > /dev/null 2>&1" ) and die "$wuLocation/xdformat -n -I $rmLocation/Libraries/RepeatMasker.lib failed with: $!";
- system( "$wuLocation/xdformat -p -I "
-- . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" );
-+ . "$rmLocation/Libraries/RepeatPeps.lib > /dev/null 2>&1" ) and die "$wuLocation/xdformat -p -I $rmLocation/Libraries/RepeatPeps.lib failed with: $!";
-
- my $wuDefault = &promptScreen(
- "",
-@@ -733,7 +732,7 @@
- }
- }
- else {
-- print "ERROR: Could not find nhmmer program in this directory!\n";
-+ print "ERROR: Could not find nhmmer program in '$location' directory!\n";
- }
- }
-
-@@ -753,7 +752,7 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
-
- my $default = &promptScreen(
- "",
-@@ -807,7 +806,7 @@
- }
- close IN;
- close OUT;
-- system( "mv $configFile.tmp $configFile" );
-+ system( "mv $configFile.tmp $configFile" ) and die "mv $configFile.tmp $configFile failed with: $!";
-
- my $deDefault = &promptScreen(
- "",
-@@ -843,9 +842,6 @@
-
- my $answer = undef;
-
-- # Clear the screen
-- system( "clear" );
--
- print "\n\n\n";
- print $screenText;
- my $numLines = ( $screenText =~ s/(\n)/$1/g );
diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/repeatmasker/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild
deleted file mode 100644
index d41784eb7..000000000
--- a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild
+++ /dev/null
@@ -1,111 +0,0 @@
-# Copyright 1999-2018 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils perl-module
-
-MY_PV=${PV//\./-}
-
-DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
-
-LICENSE="OSL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=">=dev-lang/perl-5.8"
-RDEPEND="
- dev-perl/Text-Soundex
- sci-biology/phrap
- <=sci-biology/repeatmasker-libraries-20160829
- sci-biology/rmblast
- !sci-biology/trf
- >=sci-biology/trf-bin-4.0.4
-"
-
-S="${WORKDIR}/RepeatMasker"
-
-PATCHES=( "${FILESDIR}"/"${P}"__configure.patch )
-
-src_configure() {
- sed \
- -e "s#/usr/bin/which#which#g" \
- -e "s#/usr/bin/perl#perl#g" \
- -i "${S}"/configure || die
- perl_set_version
- insinto ${VENDOR_LIB}
- sed -e "s#/usr/perl5/lib/#${VENDOR_LIB}/#g" -i "${S}"/configure || die
- # The below is wrong as it causes:
- # Enter path [ /var/tmp/portage/sci-biology/repeatmasker-4.0.1-r1/work/RepeatMasker ]:
- # -- Building monolithic RM database...sh: /var/tmp/portage/sci-biology/repeatmasker-4.0.1-r1/image///usr/share/repeatmasker/Libraries/RepeatMasker.lib: No such file or directory
- # -e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|'
- sed -i -e 's/system( "clear" );//' "${S}/configure" || die
- mkdir -p "${ED}"/usr/share/repeatmasker/Libraries/ || die
- #
- # the below files is actually overwritten by buildRMLibFromEMBL.pl so the 'blah'
- # item does not get installed
- echo ">blah\natgc" > "${ED}"/usr/share/repeatmasker/Libraries/RepeatMasker.lib || die
- # below try to define paths to trf, cross_match, rmblast and nhmmer as search tools
- echo "
-env
-${S}
-${EPREFIX}/opt/trf/bin
-1
-${EPREFIX}/usr/bin
-Y
-2
-${EPREFIX}/usr/bin
-Y
-4
-${EPREFIX}/usr/bin
-Y
-5" | "${S}"/configure || die "configure failed"
- sed -i -e "s|use lib $FindBin::RealBin;|use lib ${EPREFIX}/usr/share/${PN}/lib;|" \
- -e "s|.*\(taxonomy.dat\)|${EPREFIX}/usr/share/${PN}/Libraries/\1|" \
- -e "/$REPEATMASKER_DIR/ s|$FindBin::RealBin|${EPREFIX}/usr/share/${PN}|" \
- "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
-}
-# configure failed to 'cp RepeatMaskerConfig.tmpl RepeatMaskerConfig.pm'
-# replace also /u1/local/bin/perl with proper Gentoo PATH
-
-src_install() {
- exeinto /usr/share/${PN}
- for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
- doexe $i
- dosym ../share/${PN}/$i /usr/bin/$i
- done
-
- perl_set_version
- insinto "${VENDOR_LIB}"
- doins "${S}"/*.pm "${S}"/Libraries/*.pm
- # zap the supposedly misplaced RepeatAnnotationData.pm file
- rm -r "${S}"/Libraries/*.pm || die
-
- # if sci-biology/repeatmasker-libraries is installed prevent file collision
- # and do NOT install Libraries/RepeatMaskerLib.embl file which contains
- # a limited version of the file: 20110419-min
- rm -r Libraries/RepeatMaskerLib.embl || die
- insinto /usr/share/${PN}
- doins -r util Matrices Libraries *.help
- keepdir /usr/share/${PN}/Libraries
-
- dodoc README INSTALL *.help
-}
-
-pkg_postinst(){
- einfo "RepeatMasker provides bundled human repeats database"
- einfo "from Dfam-1.0 database www.dfam.org"
- einfo "You can configure which search search engine is to be used and"
- einfo "PATHs to the search binaries are defined in"
- einfo "${EPREFIX}/usr/share/${PN}/lib/RepeatMaskerConfig.pm"
- einfo "Supported search engines are:"
- optfeature "cross_match" sci-biology/phrap
- optfeature "rmblast" sci-biology/rmblast
- optfeature "nhmmer" \>=sci-biology/hmmer-3.1
- einfo "abblast/wublast from http://blast.advbiocomp.com/licensing"
- einfo "repeatmasker-libraries-20160829 (RepBase 21.12) is the last"
- einfo "version compatible with <repeatmasker-4.0.7"
-}
diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.8-r1.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.8-r1.ebuild
deleted file mode 100644
index 9b4af2312..000000000
--- a/sci-biology/repeatmasker/repeatmasker-4.0.8-r1.ebuild
+++ /dev/null
@@ -1,111 +0,0 @@
-# Copyright 1999-2018 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils perl-module
-
-MY_PV=${PV//\./-}
-
-DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
-
-LICENSE="OSL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=">=dev-lang/perl-5.8"
-RDEPEND="
- dev-perl/Text-Soundex
- sci-biology/phrap
- >sci-biology/repeatmasker-libraries-20160829
- sci-biology/rmblast
- !sci-biology/trf
- >=sci-biology/trf-bin-4.0.4
-"
-
-S="${WORKDIR}/RepeatMasker"
-
-PATCHES=( "${FILESDIR}"/"${P}"__configure.patch )
-
-src_configure() {
- sed \
- -e "s#/usr/bin/which#which#g" \
- -e "s#/usr/bin/perl#perl#g" \
- -i "${S}"/configure || die
- perl_set_version
- insinto ${VENDOR_LIB}
- sed -e "s#/usr/perl5/lib/#${VENDOR_LIB}/#g" -i "${S}"/configure || die
- # The below is wrong as it causes:
- # Enter path [ /var/tmp/portage/sci-biology/repeatmasker-4.0.1-r1/work/RepeatMasker ]:
- # -- Building monolithic RM database...sh: /var/tmp/portage/sci-biology/repeatmasker-4.0.1-r1/image///usr/share/repeatmasker/Libraries/RepeatMasker.lib: No such file or directory
- # -e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|'
- sed -i -e 's/system( "clear" );//' "${S}/configure" || die
- mkdir -p "${ED}"/usr/share/repeatmasker/Libraries/ || die
- #
- # the below files is actually overwritten by buildRMLibFromEMBL.pl so the 'blah'
- # item does not get installed
- echo ">blah\natgc" > "${ED}"/usr/share/repeatmasker/Libraries/RepeatMasker.lib || die
- # below try to define paths to trf, cross_match, rmblast and nhmmer as search tools
- echo "
-env
-${S}
-${EPREFIX}/opt/trf/bin
-1
-${EPREFIX}/usr/bin
-Y
-2
-${EPREFIX}/usr/bin
-Y
-4
-${EPREFIX}/usr/bin
-Y
-5" | "${S}"/configure || die "configure failed"
- sed -i -e "s|use lib $FindBin::RealBin;|use lib ${EPREFIX}/usr/share/${PN}/lib;|" \
- -e "s|.*\(taxonomy.dat\)|${EPREFIX}/usr/share/${PN}/Libraries/\1|" \
- -e "/$REPEATMASKER_DIR/ s|$FindBin::RealBin|${EPREFIX}/usr/share/${PN}|" \
- "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
-}
-# configure failed to 'cp RepeatMaskerConfig.tmpl RepeatMaskerConfig.pm'
-# replace also /u1/local/bin/perl with proper Gentoo PATH
-
-src_install() {
- exeinto /usr/share/${PN}
- for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
- doexe $i
- dosym ../share/${PN}/$i /usr/bin/$i
- done
-
- perl_set_version
- insinto "${VENDOR_LIB}"
- doins "${S}"/*.pm "${S}"/Libraries/*.pm
- # zap the supposedly misplaced RepeatAnnotationData.pm file
- rm -r "${S}"/Libraries/*.pm || die
-
- # if sci-biology/repeatmasker-libraries is installed prevent file collision
- # and do NOT install Libraries/RepeatMaskerLib.embl file which contains
- # a limited version of the file: 20110419-min
- rm -r Libraries/RepeatMaskerLib.embl || die
- insinto /usr/share/${PN}
- doins -r util Matrices Libraries *.help
- keepdir /usr/share/${PN}/Libraries
-
- dodoc README.md INSTALL *.help
-}
-
-pkg_postinst(){
- einfo "RepeatMasker provides bundled human repeats database"
- einfo "from Dfam-1.0 database www.dfam.org"
- einfo "You can configure which search search engine is to be used and"
- einfo "PATHs to the search binaries are defined in"
- einfo "${EPREFIX}/usr/share/${PN}/lib/RepeatMaskerConfig.pm"
- einfo "Supported search engines are:"
- optfeature "cross_match" sci-biology/phrap
- optfeature "rmblast" sci-biology/rmblast
- optfeature "nhmmer" \>=sci-biology/hmmer-3.1
- einfo "abblast/wublast from http://blast.advbiocomp.com/licensing"
- einfo "repeatmasker-libraries-20160829 (RepBase 21.12) was the last"
- einfo "version compatible with <repeatmasker-4.0.7"
-}