diff options
Diffstat (limited to 'sci-biology/sailfish/sailfish-0.10.0.ebuild')
| -rw-r--r-- | sci-biology/sailfish/sailfish-0.10.0.ebuild | 11 |
1 files changed, 10 insertions, 1 deletions
diff --git a/sci-biology/sailfish/sailfish-0.10.0.ebuild b/sci-biology/sailfish/sailfish-0.10.0.ebuild index 4aef4312e..8ba4d0cf7 100644 --- a/sci-biology/sailfish/sailfish-0.10.0.ebuild +++ b/sci-biology/sailfish/sailfish-0.10.0.ebuild @@ -8,7 +8,11 @@ inherit cmake multilib DESCRIPTION="Rapid Mapping-based Isoform Quantification from RNA-Seq Reads" HOMEPAGE="https://www.cs.cmu.edu/~ckingsf/software/sailfish/" SRC_URI="https://github.com/kingsfordgroup/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://github.com/COMBINE-lab/RapMap/archive/quasi-mph.zip" + https://github.com/COMBINE-lab/RapMap/archive/quasi-mph.zip + https://github.com/gmarcais/Jellyfish/releases/download/v2.2.5/jellyfish-2.2.5.tar.gz + https://github.com/COMBINE-lab/sparsehash/archive/sparsehash-2.0.2.tar.gz + https://github.com/Kingsford-Group/libgff/archive/v1.0.tar.gz +" LICENSE="GPL-3+" SLOT="0" @@ -45,10 +49,15 @@ src_unpack() { mkdir -p "${S}/external" cp "${DISTDIR}/quasi-mph.zip" "${S}/external/rapmap.zip" || die mv "${WORKDIR}/RapMap-quasi-mph" "${S}/external/RapMap" || die + mv "${WORKDIR}/jellyfish-2.2.5" "${S}/external/jellyfish-2.2.5" || die + mv "${WORKDIR}/sparsehash-sparsehash-2.0.2" "${S}/external/sparsehash-sparsehash-2.0.2" || die + mv "${WORKDIR}/libgff-1.0" "${S}/external/libgff" || die mkdir -p "${S}/external/install/lib" cp "${EPREFIX}/usr/$(get_libdir)/libdivsufsort.so" "${S}/external/install/lib/" || die cp "${EPREFIX}/usr/$(get_libdir)/libdivsufsort64.so" "${S}/external/install/lib/" || die cp "${EPREFIX}/usr/$(get_libdir)/libjellyfish-2.0.so" "${S}/external/install/lib/" || die + mkdir -p "${S}/external/install/src/rapmap" + cp "${S}/external/RapMap/src/"* "${S}/external/install/src/rapmap" || die } src_prepare() { |