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Diffstat (limited to 'sci-biology/samri/samri-0.4.1.ebuild')
-rw-r--r--sci-biology/samri/samri-0.4.1.ebuild58
1 files changed, 0 insertions, 58 deletions
diff --git a/sci-biology/samri/samri-0.4.1.ebuild b/sci-biology/samri/samri-0.4.1.ebuild
deleted file mode 100644
index 79c5949de..000000000
--- a/sci-biology/samri/samri-0.4.1.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7..8} )
-
-inherit distutils-r1
-
-DESCRIPTION="Small Animal Magnetic Resonance Imaging"
-HOMEPAGE="https://github.com/IBT-FMI/SAMRI"
-SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE="labbookdb test"
-KEYWORDS="~amd64"
-RESTRICT="!test? ( test )"
-
-DEPEND="
- test? (
- dev-python/pytest[${PYTHON_USEDEP}]
- sci-biology/samri_bidsdata
- sci-biology/samri_bindata
- )
-"
-RDEPEND="
- dev-python/argh[${PYTHON_USEDEP}]
- dev-python/joblib[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}]
- >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/seaborn[${PYTHON_USEDEP}]
- dev-python/statsmodels[${PYTHON_USEDEP}]
- media-gfx/blender
- >=sci-biology/fsl-5.0.9
- sci-biology/bru2nii
- sci-biology/mouse-brain-atlases
- labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] )
- sci-libs/nibabel[${PYTHON_USEDEP}]
- >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}]
- >=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}]
- <=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}]
- sci-libs/scikit-image[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- sci-biology/ants
- sci-biology/afni
- sci-biology/nilearn[${PYTHON_USEDEP}]
-"
-
-S="${WORKDIR}/SAMRI-${PV}"
-
-src_prepare() {
- distutils-r1_src_prepare
- sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri`
- sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh`
- eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh)
-}