diff options
Diffstat (limited to 'sci-biology/samri/samri-9999.ebuild')
| -rw-r--r-- | sci-biology/samri/samri-9999.ebuild | 40 |
1 files changed, 23 insertions, 17 deletions
diff --git a/sci-biology/samri/samri-9999.ebuild b/sci-biology/samri/samri-9999.ebuild index 507d6a53c..f632f83a8 100644 --- a/sci-biology/samri/samri-9999.ebuild +++ b/sci-biology/samri/samri-9999.ebuild @@ -1,26 +1,31 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..8} ) +PYTHON_COMPAT=( python3_{10..11} ) +DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 git-r3 +inherit distutils-r1 prefix DESCRIPTION="Small Animal Magnetic Resonance Imaging" HOMEPAGE="https://github.com/IBT-FMI/SAMRI" -SRC_URI="" -EGIT_REPO_URI="https://github.com/IBT-FMI/SAMRI" +if [ "$PV" == "9999" ]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/IBT-FMI/SAMRI.git" +else + SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64" + S="${WORKDIR}/SAMRI-${PV}" +fi LICENSE="GPL-3" SLOT="0" -IUSE="+atlases labbookdb test" -KEYWORDS="" -RESTRICT="!test? ( test )" +IUSE="+atlases labbookdb" +REQUIRED_USE="test? ( atlases )" DEPEND=" test? ( - dev-python/pytest[${PYTHON_USEDEP}] sci-biology/samri_bidsdata sci-biology/samri_bindata ) @@ -37,24 +42,25 @@ RDEPEND=" >=media-gfx/blender-2.83.4 >=sci-biology/fsl-5.0.9 sci-biology/bru2nii - atlases? ( sci-biology/mouse-brain-atlases ) + atlases? ( sci-biology/mouse-brain-templates ) labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) sci-libs/nibabel[${PYTHON_USEDEP}] >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] >=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}] - sci-libs/pybids[${PYTHON_USEDEP}] - sci-libs/scikit-image[${PYTHON_USEDEP}] + <sci-libs/pybids-0.10.2[${PYTHON_USEDEP}] + dev-python/scikit-image[${PYTHON_USEDEP}] sci-biology/ants sci-biology/afni sci-biology/nilearn[${PYTHON_USEDEP}] " -REQUIRED_USE="test? ( atlases )" +distutils_enable_tests pytest +distutils_enable_sphinx doc/source dev-python/sphinxcontrib-napoleon src_prepare() { distutils-r1_src_prepare - sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri` - sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri` || die + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` || die eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) } @@ -67,5 +73,5 @@ python_test() { sed -i -e \ "/def test_bru2bids():/i@pytest.mark.skip('Removed in full test suite, as this is already tested in `test_scripts.sh`')" \ samri/pipelines/tests/test_repos.py || die - pytest -vv -k "not longtime" || die + epytest -k "not longtime" } |