diff options
Diffstat (limited to 'sci-biology/sga/sga-9999.ebuild')
| -rw-r--r-- | sci-biology/sga/sga-9999.ebuild | 25 |
1 files changed, 15 insertions, 10 deletions
diff --git a/sci-biology/sga/sga-9999.ebuild b/sci-biology/sga/sga-9999.ebuild index 52f7bb69c..7519b3e2a 100644 --- a/sci-biology/sga/sga-9999.ebuild +++ b/sci-biology/sga/sga-9999.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils git-r3 +inherit git-r3 autotools DESCRIPTION="String Graph OLC Assembler for short reads (overlap-layout-consensus)" HOMEPAGE="https://github.com/jts/sga" @@ -14,20 +14,27 @@ SLOT="0" KEYWORDS="" IUSE="jemalloc python" -DEPEND="dev-cpp/sparsehash +DEPEND=" + dev-cpp/sparsehash sci-biology/bamtools sys-libs/zlib - jemalloc? ( dev-libs/jemalloc )" + jemalloc? ( dev-libs/jemalloc ) +" RDEPEND="${DEPEND} sci-biology/abyss python? ( sci-biology/pysam sci-biology/ruffus )" +S="${WORKDIR}/${P}/src" + +src_prepare() { + default + eautoreconf +} + # http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/install/sga.htm src_configure(){ - cd src || die - ./autogen.sh || die - econf --with-bamtools="${EPREFIX}"/usr + econf --with-bamtools="${EPREFIX}"/usr --with-sparsehash="${EPREFIX}"/usr } src_compile(){ @@ -38,12 +45,10 @@ src_compile(){ # # other unreviewed patches: # https://github.com/jts/sga/issues/96 - cd src || die "Try -std=g++-98, try gcc-5 or -std=c++03" default } src_install(){ - cd src || die dodoc README emake install DESTDIR="${D}" insinto /usr/share/sga/examples |