diff options
Diffstat (limited to 'sci-biology/staden/staden-9999.ebuild')
-rw-r--r-- | sci-biology/staden/staden-9999.ebuild | 69 |
1 files changed, 0 insertions, 69 deletions
diff --git a/sci-biology/staden/staden-9999.ebuild b/sci-biology/staden/staden-9999.ebuild deleted file mode 100644 index 7b61a0fa0..000000000 --- a/sci-biology/staden/staden-9999.ebuild +++ /dev/null @@ -1,69 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit flag-o-matic fortran-2 multilib subversion - -DESCRIPTION="DNA sequence assembly (gap4, gap5), editing and analysis tools (Spin)" -HOMEPAGE="https://sourceforge.net/projects/staden/" -ESVN_REPO_URI="https://svn.code.sf.net/p/${PN}/code/${PN}/trunk" - -LICENSE="staden" -SLOT="0" -KEYWORDS="" -IUSE="debug doc fortran png tcl tk X zlib" - -# either g77 or gfortran must be available -# edit src/mk/linux.mk accordingly -# -# this is a glibc-2.9 issue, see https://sourceforge.net/tracker/index.php?func=detail&aid=2629155&group_id=100316&atid=627058 -# -# -# -DEPEND=" - app-arch/xz-utils - dev-lang/tk:0= - dev-tcltk/tklib - media-libs/libpng:0 - sci-biology/samtools:0 - >=sci-libs/io_lib-1.13.8 - sys-libs/zlib" -RDEPEND="${DEPEND} - >=dev-tcltk/iwidgets-4.0 - tcl? ( >=dev-tcltk/itcl-3.2 ) - tk? ( >=dev-tcltk/itk-3.2 ) - net-misc/curl - doc? ( sci-biology/staden_doc )" - -src_prepare() { - default - sed \ - -e 's:svnversion:false:' \ - -i configure.in || die -} - -src_configure(){ - use debug && append-cflags "-DCACHE_REF_DEBUG" - econf \ - $(use_enable X x) \ - $(use_enable amd64 64bit) \ - --with-tklib="/usr/$(get_libdir)/tklib" -} - -src_install() { - default - # install the LDPATH so that it appears in /etc/ld.so.conf after env-update - # subsequently, apps linked against /usr/lib/staden can be run because - # loader can find the library (I failed to use '-Wl,-rpath,/usr/lib/staden' - # somehow for gap2caf, for example - cat >> "${T}"/99staden <<- EOF - STADENROOT="${EPREFIX}"/usr/share/staden - LDPATH="${EPREFIX}/usr/$(get_libdir)/staden" - EOF - doenvd "${T}"/99staden -} - -pkg_postinst(){ - einfo "There is a tutorial at https://sourceforge.net/projects/staden/files/tutorials/1.1/course-1.1.tar.gz" -} |