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Diffstat (limited to 'sci-biology/staden/staden-9999.ebuild')
-rw-r--r--sci-biology/staden/staden-9999.ebuild69
1 files changed, 0 insertions, 69 deletions
diff --git a/sci-biology/staden/staden-9999.ebuild b/sci-biology/staden/staden-9999.ebuild
deleted file mode 100644
index 7b61a0fa0..000000000
--- a/sci-biology/staden/staden-9999.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit flag-o-matic fortran-2 multilib subversion
-
-DESCRIPTION="DNA sequence assembly (gap4, gap5), editing and analysis tools (Spin)"
-HOMEPAGE="https://sourceforge.net/projects/staden/"
-ESVN_REPO_URI="https://svn.code.sf.net/p/${PN}/code/${PN}/trunk"
-
-LICENSE="staden"
-SLOT="0"
-KEYWORDS=""
-IUSE="debug doc fortran png tcl tk X zlib"
-
-# either g77 or gfortran must be available
-# edit src/mk/linux.mk accordingly
-#
-# this is a glibc-2.9 issue, see https://sourceforge.net/tracker/index.php?func=detail&aid=2629155&group_id=100316&atid=627058
-#
-#
-#
-DEPEND="
- app-arch/xz-utils
- dev-lang/tk:0=
- dev-tcltk/tklib
- media-libs/libpng:0
- sci-biology/samtools:0
- >=sci-libs/io_lib-1.13.8
- sys-libs/zlib"
-RDEPEND="${DEPEND}
- >=dev-tcltk/iwidgets-4.0
- tcl? ( >=dev-tcltk/itcl-3.2 )
- tk? ( >=dev-tcltk/itk-3.2 )
- net-misc/curl
- doc? ( sci-biology/staden_doc )"
-
-src_prepare() {
- default
- sed \
- -e 's:svnversion:false:' \
- -i configure.in || die
-}
-
-src_configure(){
- use debug && append-cflags "-DCACHE_REF_DEBUG"
- econf \
- $(use_enable X x) \
- $(use_enable amd64 64bit) \
- --with-tklib="/usr/$(get_libdir)/tklib"
-}
-
-src_install() {
- default
- # install the LDPATH so that it appears in /etc/ld.so.conf after env-update
- # subsequently, apps linked against /usr/lib/staden can be run because
- # loader can find the library (I failed to use '-Wl,-rpath,/usr/lib/staden'
- # somehow for gap2caf, for example
- cat >> "${T}"/99staden <<- EOF
- STADENROOT="${EPREFIX}"/usr/share/staden
- LDPATH="${EPREFIX}/usr/$(get_libdir)/staden"
- EOF
- doenvd "${T}"/99staden
-}
-
-pkg_postinst(){
- einfo "There is a tutorial at https://sourceforge.net/projects/staden/files/tutorials/1.1/course-1.1.tar.gz"
-}