1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.13.2.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.13.2.ebuild
new file mode 100644
index 000000000..3b94d9713
--- /dev/null
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.13.2.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit perl-module
+
+DESCRIPTION="Transcriptome assembler for RNA-seq reads"
+HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki"
+SRC_URI="https://github.com/${PN}/${PN}/releases/download/Trinity-v${PV}/${PN}-v${PV}.FULL_with_extendedTestData.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/${PN}-v${PV}"
+
+LICENSE="BSD-BroadInstitute"
+SLOT="0"
+KEYWORDS="~amd64"
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sci-biology/parafly
+	>=sci-biology/jellyfish-2.2.6:2
+	>=sci-libs/htslib-1.2.1
+	>=sci-biology/samtools-1.3:0
+	>=sci-biology/trimmomatic-0.36
+	>=sci-biology/GAL-0.2.1
+	dev-perl/IO-All
+	sci-biology/seqtools
+"
+
+PATCHES=(
+	"${FILESDIR}/${PN}-2.11.0-fix-compilation.patch"
+)
+
+src_compile(){
+	# missing submodule for bamsifter
+	emake no_bamsifter
+	emake plugins
+}
+
+src_install(){
+	# fix the install path
+	sed -e "s:/usr/local/bin:${ED}/usr/bin:g" \
+		-i util/support_scripts/trinity_installer.py || die
+	dodir /usr/bin
+	default
+}