1 files changed, 0 insertions, 59 deletions
diff --git a/sci-biology/vcflib/vcflib-1.0.2.ebuild b/sci-biology/vcflib/vcflib-1.0.2.ebuild
deleted file mode 100644
index 272e69483..000000000
--- a/sci-biology/vcflib/vcflib-1.0.2.ebuild
+++ /dev/null
@@ -1,59 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit cmake toolchain-funcs
-
-DESCRIPTION="VCF/BED utils, Genotype Phenotype Association Toolkit (GPAT++)"
-HOMEPAGE="https://github.com/vcflib/vcflib"
-SRC_URI="https://github.com/vcflib/vcflib/releases/download/v${PV}/${P}-src.tar.gz"
-
-# vcflib is incorporated into several projects, such as freebayes
-
-LICENSE="MIT-with-advertising"
-SLOT="0"
-KEYWORDS=""
-IUSE="openmp"
-
-DEPEND="
-	sys-libs/zlib
-	sci-libs/htslib
-	sci-biology/tabixpp
-"
-RDEPEND="${DEPEND}"
-# contains bundled sci-biology/htslib ?
-# see also ./include for possible traces of other bundled sw
-
-S="${WORKDIR}/${PN}"
-
-src_prepare(){
-	cmake_src_prepare
-	sed -e "s/^CXX = g++/CXX = $(tc-getCXX)/" -i Makefile || die
-	sed -e "s/^CXXFLAGS = -O3/CXXFLAGS = ${CXXFLAGS}/" -i Makefile || die
-	# openmp detection stolen from velvet-1.2.10.ebuild
-	if use openmp; then
-		if [[ $(tc-getCXX) =~ g++ ]]; then
-			local eopenmp=-fopenmp
-		elif [[ $(tc-getCXX) =~ cxx ]]; then
-			local eopenmp=-openmp
-			sed -e "s/-fopenmp/${eopenmp}/" -i Makefile || die
-		else
-			elog "Cannot detect compiler type so not setting openmp support"
-		fi
-	fi
-}
-
-src_compile(){
-	mycmakeargs=(
-		-DOPENMP="$(use_enable openmp)"
-		-DHTSLIB_LOCAL=NO
-	)
-	cmake_src_compile
-}
-#
-# src_install(){
-# 	dobin bin/*
-# 	dolib lib/* # install libvcflib.a
-# 	dodoc README.md
-# }