diff options
Diffstat (limited to 'sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild')
| -rw-r--r-- | sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild | 58 |
1 files changed, 0 insertions, 58 deletions
diff --git a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild b/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild deleted file mode 100644 index 165f2b068..000000000 --- a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild,v 1.1 2009/06/05 15:16:05 weaver Exp $ - -EAPI="2" - -inherit eutils - -DESCRIPTION="Whole-genome shotgun assembler based on the Celera Assembler" -HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/" -SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~x86 ~amd64" - -DEPEND="x11-libs/libXt" -RDEPEND="${DEPEND} - app-shells/tcsh - dev-perl/Log-Log4perl" - -S="${WORKDIR}/wgs-${PV}" - -src_configure() { - cd "${S}/kmer" - ./configure.sh || die -} - -src_compile() { - # not really an install target - # WARNING: untracked failure compiling the second target - emake -C kmer -j1 install || die - emake -C src -j1 SITE_NAME=LOCAL || die -} - -src_install() { - OSTYPE=$(uname) - MACHTYPE=$(uname -m) - MACHTYPE=${MACHTYPE/x86_64/amd64} - MY_S="${OSTYPE}-${MACHTYPE}" - sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die - - sed -i '/sub getBinDirectory/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die - sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die - - dobin kmer/${MY_S}/bin/* || die - dolib.a kmer/${MY_S}/lib/* || die - - insinto /usr/share/${PN} - doins -r ${MY_S}/bin/spec - insinto /usr/share/${PN}/lib - doins -r ${MY_S}/bin/TIGR || die - rm -rf ${MY_S}/bin/{TIGR,spec} - dobin ${MY_S}/bin/* || die - dolib.a ${MY_S}/lib/* || die - dodoc README -} |