1 files changed, 0 insertions, 187 deletions
diff --git a/sci-chemistry/nmrpipe/nmrpipe-8.7.20200827.ebuild b/sci-chemistry/nmrpipe/nmrpipe-8.7.20200827.ebuild
deleted file mode 100644
index 303f2c4a2..000000000
--- a/sci-chemistry/nmrpipe/nmrpipe-8.7.20200827.ebuild
+++ /dev/null
@@ -1,187 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-# Versioning is output of nmrPipe -help
-
-EAPI=7
-
-inherit virtualx
-
-DESCRIPTION="Spectral visualisation, analysis and Fourier processing"
-HOMEPAGE="https://www.ibbr.umd.edu/nmrpipe"
-#SRC_URI="
-#	NMRPipeX.tZ
-#	talos.tZ
-#	dyn.tZ
-#	binval.com
-#	install.com"
-SRC_URI="
-	https://www.ibbr.umd.edu/nmrpipe/install.com -> install-${PV}.com
-	https://www.ibbr.umd.edu/nmrpipe/binval.com -> binval-${PV}.com
-	https://www.ibbr.umd.edu/nmrpipe/NMRPipeX.tZ -> NMRPipeX-${PV}.tZ
-	https://www.ibbr.umd.edu/nmrpipe/plugin.smile.tZ -> plugin.smile-${PV}.tZ
-	https://www.ibbr.umd.edu/nmrpipe/talos.tZ -> talos-${PV}.tZ
-	https://www.ibbr.umd.edu/nmrpipe/dyn.tZ -> dyn-${PV}.tZ
-	"
-
-SLOT="0"
-LICENSE="nmrpipe"
-# Right now, precompiled executables are only available for Linux on the
-# x86 architecture. The maintainer chose to keep the sources closed, but
-# says he will gladly provide precompiled executables for other platforms
-# if there are such requests.
-KEYWORDS="~amd64 ~x86"
-
-RESTRICT="strip bindist mirror !test? ( test )"
-
-DEPEND="app-shells/tcsh"
-RDEPEND="${DEPEND}
-	app-editors/nedit
-	dev-lang/tk
-	dev-tcltk/blt
-	media-fonts/font-sun-misc
-	sys-libs/ncurses-compat:5/5
-	x11-apps/xset
-	x11-libs/xview-bin
-	!prefix? ( >=x11-libs/libX11-1.6.2 )
-	prefix? ( dev-util/patchelf )"
-
-S="${WORKDIR}/NMR"
-
-NMRBASE="/opt/${PN}"
-ENMRBASE="${EPREFIX}/${NMRBASE}"
-
-QA_PREBUILT="opt/.*"
-
-src_unpack() {
-	# The installation script will unpack the package. We just provide symlinks
-	# to the archive files, ...
-	for i in NMRPipeX-${PV}.tZ plugin.smile-${PV}.tZ talos-${PV}.tZ dyn-${PV}.tZ; do
-		ln -sf "${DISTDIR}"/${i} ${i/-${PV}/} || die
-	done
-	mkdir "${S}" && cd "${S}" || die
-	# ... copy the installation scripts ...
-	cp -L "${DISTDIR}"/install-${PV}.com install.com || die
-	cp -L "${DISTDIR}"/binval-${PV}.com binval.com || die
-	# ... and make the installation scripts executable.
-	chmod +x *.com || die
-	VIRTUALX_COMMAND="csh"
-	virtx \
-		./install.com \
-		+type $(usex x86 linux9 linux212_64) \
-		+src "${WORKDIR}" \
-		+dest "${S}" \
-		+nopost +nocshrc
-}
-
-src_prepare() {
-	default
-	local bin i
-
-	mv nmrbin.$(usex x86 linux9 linux212_64)/nmr{W,w}ish || die
-
-	ebegin "Cleaning installation"
-
-	# Remove some of the bundled applications and libraries; they are provided by Gentoo instead.
-	rm -rf nmrbin.linux*/{lib/*.timestamp,*timestamp,xv,gnuplot*,rasmol*,nc,nedit} \
-		nmrbin.{linux,mac} nmruser format \
-		$(usex x86 nmrbin.linux212_64 nmrbin.linux9) \
-		|| die "Failed to remove unnecessary libraries."
-	# As long as xview is not fixed for amd64 we do this
-	rm nmrbin.linux*/lib/{libxview.so*,libolgx.so*} || die
-	# Remove the initialisation script generated during the installation.
-	# It contains incorrect hardcoded paths; only the "nmrInit.com" script
-	# should be used.
-	rm -f com/nmrInit.linux*.com || die "Failed to remove broken init script."
-	# Remove installation log files.
-	rm -f README_NMRPIPE_USERS *.log install.com binval.com || die "Failed to remove installation log."
-	# Remove unused binaries
-	rm -f {talos*,spartaplus,promega}/bin/*{linux,mac,sgi6x,winxp} pdb/misc/addSeg || die
-
-	# Some scripts are on the wrong place
-	cp -f nmrtxt/*.com com/
-	rm -f {acme,com}/{nmrproc,fid,install}.com || die
-	eend
-
-	ebegin "Fixing paths in scripts"
-
-	# Set the correct path to NMRPipe in the auxiliary scripts.
-	for i in $(find com/ dynamo/surface/misc/ nmrtxt/ talos/misc talosplus/com -type f); do
-		sed -e "s%/u/delaglio%${ENMRBASE}%" -i ${i} || die \
-			"Failed patching scripts."
-	done
-	sed -i "s:${WORKDIR}:${ENMRBASE}:g" com/font.com || die
-
-	sed \
-		-e "s:!/bin:!${EPREFIX}/bin:g" \
-		-e "s:!/usr/bin:!${EPREFIX}/usr/bin:g" \
-		-e "s:!/usr/local/bin:!${EPREFIX}/usr/bin:g" \
-		-e "s: /bin: ${EPREFIX}/bin:g" \
-		-e "s: /usr/bin: ${EPREFIX}/usr/bin:g" \
-		-e "s: /usr/local/bin: ${EPREFIX}/usr/bin:g" \
-		-i $(find "${S}" \( -name "*.tcl" -o -name "*.com" -o -name "*.ksh" \)) \
-			{com/,nmrtxt/*.com,nmrtxt/nt/*.com,dynamo/tcl/,talos*/com/,dynamo/tcl/}* \
-			nmrbin.linux*/{nmrDraw,xNotify} || die
-	eend
-
-	if use prefix; then
-		sed \
-			-e "s: sh : \"${EPREFIX}/bin/sh\" :g" \
-			-e "s: csh : \"${EPREFIX}/bin/csh\" :g" \
-			-e "s: bash : \"${EPREFIX}/bin/bash\" :g" \
-			-e "s:appTerm -e:appTerm -e \"${EPREFIX}/bin/csh\":g" \
-			-i com/* || die
-
-		ebegin "Setting RPATH in binaries"
-		for bin in $(find nmrbin.linux*/ -type f -maxdepth 1); do
-			patchelf --set-rpath "${EPREFIX}/usr/lib/" ${bin}
-		done
-		eend $?
-	fi
-}
-
-src_install() {
-	cat >> "${T}"/nmrWish <<- EOF
-	#!${EPREFIX}/bin/csh -f
-	setenv NMRBIN \${NMRBASE}/bin/
-	setenv NMRLIB \${NMRBIN}/lib
-	setenv AUXLIB \${NMRBIN}/openwin/lib
-	setenv TCLPATH \${NMRBASE}/com
-	setenv TCL_LIBRARY \${NMRBASE}/nmrtcl/tcl8.4
-	setenv TK_LIBRARY \${NMRBASE}/nmrtcl/tk8.4
-	setenv BLT_LIBRARY \${NMRBASE}/nmrtcl/blt2.4
-	setenv NMRPIPE_TCL_LIB \${NMRBASE}/nmrtcl/tcl8.4
-	setenv NMRPIPE_TK_LIB \${NMRBASE}/nmrtcl/tk8.4
-	setenv NMRPIPE_BLT_LIB \${NMRBASE}/nmrtcl/blt2.4
-
-	if (!(\$?LD_LIBRARY_PATH)) then
-		setenv LD_LIBRARY_PATH \${NMRLIB}:\${AUXLIB}
-	else
-		setenv LD_LIBRARY_PATH \${NMRLIB}:\${LD_LIBRARY_PATH}:\${AUXLIB}
-	endif
-
-	nmrwish \$*
-	EOF
-
-	sed \
-		-e "s:/opt/nmrpipe:${EPREFIX}/opt/nmrpipe:g" \
-		-e "s:@BINTYPE@:$(usex x86 linux9 linux212_64):g" \
-		"${FILESDIR}"/env-${PN} \
-		> "${T}"/env-${PN} || die
-	newenvd "${T}"/env-${PN} 40${PN}
-
-	insinto ${NMRBASE}
-	doins -r *
-
-	dosym nmrbin.linux* ${NMRBASE}/bin
-
-	ebegin "Fixing permissions"
-	chmod 775 "${ED}"/${NMRBASE}/{talos*/bin/,sparta*/bin/,nmrbin.linux*/,com/,dynamo/tcl/,nmrtxt/*.com,talos*/com/,promega/bin/}* || die
-	eend
-
-	exeinto ${NMRBASE}/nmrbin.$(usex x86 linux9 linux212_64)
-	doexe "${T}"/nmrWish
-
-	insinto ${NMRBASE}/nmrtxt
-	doins "${FILESDIR}"/extract.M
-}