1 files changed, 116 insertions, 0 deletions
diff --git a/sci-chemistry/pymol/pymol-1.2.2.ebuild b/sci-chemistry/pymol/pymol-1.2.2.ebuild
new file mode 100644
index 000000000..1e9b05ec1
--- /dev/null
+++ b/sci-chemistry/pymol/pymol-1.2.2.ebuild
@@ -0,0 +1,116 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="2"
+
+inherit distutils #subversion
+
+PYTHON_MODNAME="chempy pmg_tk pymol"
+APBS_PATCH="090618"
+REV="3859"
+
+DESCRIPTION="A Python-extensible molecular graphics system."
+HOMEPAGE="http://pymol.sourceforge.net/"
+SRC_URI="apbs? ( mirror://gentoo/apbs_tools.py.${APBS_PATCH}.bz2 )
+	http://pymol.svn.sourceforge.net/viewvc/pymol/trunk/pymol.tar.gz?view=tar&pathrev=${REV} -> ${P}.tar.gz"
+
+LICENSE="PSF-2.2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="apbs shaders"
+
+DEPEND="dev-python/pmw
+		dev-python/numpy
+		>=dev-lang/python-2.4[tk]
+		media-libs/libpng
+		sys-libs/zlib
+		virtual/glut
+		media-video/mpeg-tools
+		apbs? ( dev-libs/maloc
+			sci-chemistry/apbs
+			sci-chemistry/pdb2pqr
+		)"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/${PN}
+
+pkg_setup(){
+	python_version
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}/${P}-data-path.patch \
+		|| die "Failed to apply data-path.patch"
+
+	# Turn off splash screen.  Please do make a project contribution
+	# if you are able though.
+	[[ -n ${WANT_SPLASH} ]] || epatch "${FILESDIR}"/${PV}/nosplash-gentoo.patch
+
+	# Respect CFLAGS
+	sed -i \
+		-e "s:\(ext_comp_args=\).*:\1[]:g" \
+		"${S}"/setup.py || die "Failed running sed on setup.py"
+
+	use shaders && epatch "${FILESDIR}"/${PV}/${P}-shaders.patch
+
+	if use apbs; then
+		cp -f "${WORKDIR}"/apbs_tools.py.${APBS_PATCH} modules/pmg_tk/startup/apbs_tools.py \
+			|| die "Failed to copy apbs_tools.py"
+
+		sed "s:LIBANDPYTHON:$(python_get_libdir):g" \
+			-i modules/pmg_tk/startup/apbs_tools.py \
+				|| die "Failed running sed on apbs_tools.py"
+	fi
+}
+
+src_configure() {
+	:
+}
+
+src_install() {
+	distutils_src_install
+
+	# These environment variables should not go in the wrapper script, or else
+	# it will be impossible to use the PyMOL libraries from Python.
+	cat >> "${T}"/20pymol <<- EOF
+		PYMOL_PATH=$(python_get_sitedir)/${PN}
+		PYMOL_DATA="/usr/share/pymol/data"
+		PYMOL_SCRIPTS="/usr/share/pymol/scripts"
+	EOF
+
+	if use apbs; then
+		echo "APBS_PSIZE=$(python_get_sitedir)/pdb2pqr/src/psize.py" >> "${T}"/20pymol
+	fi
+
+	doenvd "${T}"/20pymol || die "Failed to install env.d file."
+
+	cat >> "${T}"/pymol <<- EOF
+	#!/bin/sh
+	${python} -O \${PYMOL_PATH}/__init__.py \$*
+	EOF
+
+	dobin "${T}"/pymol || die "Failed to install wrapper."
+
+	insinto /usr/share/pymol
+	doins -r test data scripts || die "no shared data"
+
+	insinto /usr/share/pymol/examples
+	doins -r examples || die "Failed to install docs."
+
+	dodoc DEVELOPERS README || die "Failed to install docs."
+
+	if ! use apbs; then
+		rm "${D}"$(python_get_sitedir)/pmg_tk/startup/apbs_tools.py
+	fi
+}
+
+pkg_postinst(){
+	distutils_pkg_postinst
+
+	# The apbs ebuild was just corrected and not bumped #213616
+	if use apbs; then
+		[ -e /usr/share/apbs-0.5* ] && \
+		ewarn "You need to reemerge sci-chemistry/apbs!"
+	fi
+}