diff options
Diffstat (limited to 'sci-chemistry/pymol/pymol-9999.ebuild')
| -rw-r--r-- | sci-chemistry/pymol/pymol-9999.ebuild | 21 |
1 files changed, 16 insertions, 5 deletions
diff --git a/sci-chemistry/pymol/pymol-9999.ebuild b/sci-chemistry/pymol/pymol-9999.ebuild index cd5715317..957afd086 100644 --- a/sci-chemistry/pymol/pymol-9999.ebuild +++ b/sci-chemistry/pymol/pymol-9999.ebuild @@ -32,11 +32,13 @@ DEPEND=" apbs? ( sci-chemistry/apbs[${PYTHON_USEDEP}] sci-chemistry/pdb2pqr[${PYTHON_USEDEP}] - sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] + !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] ) web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" RDEPEND="${DEPEND}" +PATCHES=( "${FILESDIR}"/${P}-tk8.6.patch ) + src_unpack() { unpack ${A} subversion_src_unpack @@ -49,8 +51,6 @@ python_prepare_all() { -e "/import/s:argparse:argparseX:g" \ -i setup.py || die - rm ./modules/pmg_tk/startup/apbs_tools.py || die - sed \ -e "s:/opt/local:${EPREFIX}/usr:g" \ -e '/ext_comp_args/s:\[.*\]:[]:g' \ @@ -66,17 +66,28 @@ src_prepare() { python_install() { distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" + + sed \ + -e '1d' \ + -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ + -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ + -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ + -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die } python_install_all() { distutils-r1_python_install_all - python_export python2_7 EPYTHON + sed \ + -e '1i#!/usr/bin/env python' \ + "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die + + python_foreach_impl python_doscript "${T}"/${PN} # These environment variables should not go in the wrapper script, or else # it will be impossible to use the PyMOL libraries from Python. cat >> "${T}"/20pymol <<- EOF - PYMOL_PATH="$(python_get_sitedir)/${PN}" + PYMOL_PATH="${EPREFIX}/usr/share/pymol" PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" EOF |