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Diffstat (limited to 'sci-chemistry/relion/relion-9999.ebuild')
-rw-r--r-- | sci-chemistry/relion/relion-9999.ebuild | 69 |
1 files changed, 69 insertions, 0 deletions
diff --git a/sci-chemistry/relion/relion-9999.ebuild b/sci-chemistry/relion/relion-9999.ebuild new file mode 100644 index 000000000..12e09d2fe --- /dev/null +++ b/sci-chemistry/relion/relion-9999.ebuild @@ -0,0 +1,69 @@ +# Copyright 2019-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit cmake + +DESCRIPTION="Image-processing software for cryo-electron microscopy" +HOMEPAGE="https://www3.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page" + +if [[ ${PV} = *9999* ]]; then + EGIT_REPO_URI="https://github.com/3dem/relion.git" + [[ ${PV} = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="ver${PV:0:4}" + inherit git-r3 + SRC_URI="ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz" +else + SRC_URI=" + https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz + ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz + " + KEYWORDS="~amd64" +fi + +LICENSE="GPL-2" +SLOT="0" +IUSE="+gui cuda" + +DEPEND=" + gui? ( x11-libs/fltk ) + cuda? ( dev-util/nvidia-cuda-toolkit ) + dev-cpp/tbb + sci-libs/fftw:3.0 + media-libs/tiff + virtual/mpi +" +RDEPEND=" + ${DEPEND} + sci-chemistry/ctffind +" +BDEPEND="${DEPEND}" + +src_unpack() { + git-r3_src_unpack + default +} + +src_prepare() { + cmake_src_prepare + mkdir -p "${S}/external/torch_models/" + cp "${DISTDIR}/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz" "${S}/external/torch_models/" + mkdir -p "${S}/external/torch_models/class_ranker/" + cp "${WORKDIR}/class_ranker_0.1.3_torch_1.0.1.pt" "${S}/external/torch_models/class_ranker/" + sed -e "s:{CMAKE_INSTALL_PREFIX}/lib:{CMAKE_INSTALL_PREFIX}/$(get_libdir):g" -i CMakeLists.txt || die + sed -e "s:LIBRARY DESTINATION lib:LIBRARY DESTINATION $(get_libdir):g" -i src/apps/CMakeLists.txt || die +} + +src_configure() { + CMAKE_BUILD_TYPE=Release + mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DALTCPU=$(usex !cuda) + -DFORCE_OWN_FFTW=OFF + -DFORCE_OWN_FLTK=OFF + -DFORCE_OWN_TBB=OFF + -DCUDA=$(usex cuda) + -DGUI=$(usex gui) + ) + cmake_src_configure +} |