diff options
Diffstat (limited to 'sci-libs/ccp4-libs/ccp4-libs-6.1.1-r2.ebuild')
| -rw-r--r-- | sci-libs/ccp4-libs/ccp4-libs-6.1.1-r2.ebuild | 195 |
1 files changed, 0 insertions, 195 deletions
diff --git a/sci-libs/ccp4-libs/ccp4-libs-6.1.1-r2.ebuild b/sci-libs/ccp4-libs/ccp4-libs-6.1.1-r2.ebuild deleted file mode 100644 index fdac89102..000000000 --- a/sci-libs/ccp4-libs/ccp4-libs-6.1.1-r2.ebuild +++ /dev/null @@ -1,195 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -inherit fortran eutils gnuconfig toolchain-funcs - -FORTRAN="g77 gfortran ifc" - -SRC="ftp://ftp.ccp4.ac.uk/ccp4" - -PATCH_TOT="0" -# Here's a little scriptlet to generate this list from the provided -# index.patches file -# -# i=1; while read -a line; do [[ ${line//#} != ${line} ]] && continue; -# echo "PATCH${i}=( ${line[1]}"; echo "${line[0]} )"; (( i++ )); done < -# index.patches -#PATCH1=( src/topp_ -#topp.f-r1.16.2.5-r1.16.2.6.diff ) -#PATCH2=( . -#configure-r1.372.2.18-r1.372.2.19.diff ) - -DESCRIPTION="Protein X-ray crystallography toolkit" -HOMEPAGE="http://www.ccp4.ac.uk/" -RESTRICT="mirror" -SRC_URI="${SRC}/${PV}/${P/-libs}-core-src.tar.gz" -for i in $(seq $PATCH_TOT); do - NAME="PATCH${i}[1]" - SRC_URI="${SRC_URI} - ${SRC}/${PV}/patches/${!NAME}" -done -LICENSE="ccp4" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86" -IUSE="" -RDEPEND="virtual/lapack - virtual/blas - =sci-libs/fftw-2* - app-shells/tcsh - !<sci-chemistry/ccp4-6.0.99 - sci-libs/monomer-db" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${P/-libs}" - -src_unpack() { - unpack ${A} - cd "${S}" - - einfo "Applying upstream patches ..." - for patch in $(seq $PATCH_TOT); do - base="PATCH${patch}" - dir=$(eval echo \${${base}[0]}) - p=$(eval echo \${${base}[1]}) - pushd "${dir}" >& /dev/null - ccp_patch "${DISTDIR}/${p}" - popd >& /dev/null - done - einfo "Done." - echo - - einfo "Applying Gentoo patches ..." - # These two only needed when attempting to install outside build dir via - # --bindir and --libdir instead of straight copying after build - - # it attempts to install some libraries during the build - #ccp_patch "${FILESDIR}"/${P}-install-libs-at-install-time.patch - # hklview/ipdisp.exe/xdlmapman/ipmosflm can't find libxdl_view - # without this patch when --libdir is set - # Rotgen still needs more patching to find it - #ccp_patch "${FILESDIR}"/add-xdl-libdir.patch - - # it tries to create libdir, bindir etc on live system in configure - ccp_patch "${FILESDIR}"/${PV}-dont-make-dirs-in-configure.patch - - # gerror_ gets defined twice on ppc if you're using gfortran/g95 - ccp_patch "${FILESDIR}"/6.0.2-ppc-double-define-gerror.patch - - einfo "Done." # done applying Gentoo patches - echo - - gnuconfig_update -} - -src_compile() { - # Build system is broken if we set LDFLAGS - unset LDFLAGS - - # GENTOO_OSNAME can be one of: - # irix irix64 sunos sunos64 aix hpux osf1 linux freebsd - # linux_compaq_compilers linux_intel_compilers generic Darwin - # ia64_linux_intel Darwin_ibm_compilers linux_ibm_compilers - if [[ "${FORTRANC}" = "ifc" ]]; then - if use ia64; then - GENTOO_OSNAME="ia64_linux_intel" - else - # Should be valid for x86, maybe amd64 - GENTOO_OSNAME="linux_intel_compilers" - fi - else - # Should be valid for x86 and amd64, at least - GENTOO_OSNAME="linux" - fi - - # Sets up env - ln -s \ - ccp4.setup-bash \ - "${S}"/include/ccp4.setup - - # We agree to the license by emerging this, set in LICENSE - sed -i \ - -e "s~^\(^agreed=\).*~\1yes~g" \ - "${S}"/configure - - # Fix up variables -- need to reset CCP4_MASTER at install-time - sed -i \ - -e "s~^\(setenv CCP4_MASTER.*\)/.*~\1"${WORKDIR}"~g" \ - -e "s~^\(setenv CCP4I_TCLTK.*\)/usr/local/bin~\1/usr/bin~g" \ - "${S}"/include/ccp4.setup* - - # Set up variables for build - source "${S}"/include/ccp4.setup - - export CC=$(tc-getCC) - export CXX=$(tc-getCXX) - export COPTIM=${CFLAGS} - export CXXOPTIM=${CXXFLAGS} - # Default to -O2 if FFLAGS is unset - export FC=${FORTRANC} - export FOPTIM=${FFLAGS:- -O2} - - # Fix linking - export SHARE_LIB="ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a ../libccif.a; \ - ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a ../libccif.a; \ - ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a libmmdb.a libccp4c.a ../libccif.a -lstdc++ $(gcc-config -L | awk -F: '{for(i=1; i<=NF; i++) printf " -L%s", $i}')" - - # Can't use econf, configure rejects unknown options like --prefix - ./configure \ - --onlylibs \ - --with-shared-libs \ - --with-fftw=/usr \ - --with-warnings \ - --disable-cctbx \ - --disable-clipper \ - --tmpdir="${TMPDIR}" \ - ${GENTOO_OSNAME} || die "econf failed" - emake -j1 onlylib || die "emake failed" -} - -src_install() { - # Set up variables for build - source "${S}"/include/ccp4.setup - -# Only needed when using --bindir and --libdir - # Needed to avoid errors. Originally tried to make lib and bin - # in configure script, now patched out by dont-make-dirs-in-configure.patch -# dodir /usr/include /usr/$(get_libdir) /usr/bin - -# make install || die "install failed" - einstall || die "install failed" - - # Libs - for file in "${S}"/lib/*; do - if [[ -d ${file} ]]; then - continue - elif [[ -x ${file} ]]; then - dolib.so ${file} || die - else - insinto /usr/$(get_libdir) - doins ${file} || die - fi - done - - # Fix libdir in all *.la files - sed -i \ - -e "s:^\(libdir=\).*:\1\'/usr/$(get_libdir)\':g" \ - "${D}"/usr/$(get_libdir)/*.la - - # Data - insinto /usr/share/ccp4/data/ - doins -r "${S}"/lib/data/{*.PARM,*.prt,*.lib,*.dic,*.idl,*.cif,*.resource,*.york,*.hist,fraglib,reference_structures} || die - dodoc "${S}"/lib/data/*.doc - newdoc "${S}"/lib/data/README DATA-README - - # Include files - insinto /usr/include - for i in ccp4 mmdb; do - doins -r "${S}"/include/${i} || die - done -} - -# Epatch wrapper for bulk patching -ccp_patch() { - EPATCH_SINGLE_MSG=" ${1##*/} ..." epatch ${1} -} |