diff options
Diffstat (limited to 'sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild')
| -rw-r--r-- | sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild | 204 |
1 files changed, 204 insertions, 0 deletions
diff --git a/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild b/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild new file mode 100644 index 000000000..96f56ba06 --- /dev/null +++ b/sci-libs/cctbx/cctbx-2009.11.01.0123-r1.ebuild @@ -0,0 +1,204 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="2" + +inherit toolchain-funcs python eutils + +MY_PV="${PV//./_}" + +DESCRIPTION="Computational Crystallography Toolbox" +HOMEPAGE="http://cctbx.sourceforge.net/" +SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz" +LICENSE="cctbx-2.0" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="minimal openmp threads" + +RDEPEND="!minimal? ( sci-chemistry/cns + sci-chemistry/shelx )" +DEPEND="${RDEPEND} + >=dev-util/scons-1.2" + +S="${WORKDIR}" +MY_S="${WORKDIR}"/cctbx_sources +MY_B="${WORKDIR}"/cctbx_build + +pkg_setup() { + python_version + if use openmp && + [[ $(tc-getCC)$ == *gcc* ]] && + ( [[ $(gcc-major-version)$(gcc-minor-version) -lt 42 ]] || + ! built_with_use sys-devel/gcc openmp ) + then + ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 " + ewarn "If you want to build fftw with OpenMP, abort now," + ewarn "and switch CC to an OpenMP capable compiler" + fi +} + +src_prepare() { + python_version + + local opts + local optsld + + # Wants to chmod /usr/bin/python +# epatch "${FILESDIR}"/${PV}-sandbox-violations-chmod.patch + + rm -rf "${MY_S}/scons" # "${MY_S}/boost" ## needs boost 1.39 + + mkdir -p "${MY_S}"/scons/src/ "${MY_S}/boost" + + ln -sf /usr/$(get_libdir)/scons-1.2.0 "${MY_S}"/scons/src/engine || die +# ln -sf /usr/include/boost "${MY_S}/boost/" + + # Get CXXFLAGS in format suitable for substitition into SConscript + for i in ${CXXFLAGS}; do + opts="${opts} \"${i}\"," + done + + # Strip off the last comma + opts=${opts%,} + + # Fix CXXFLAGS + sed -i \ + -e "s:\"-O3\", \"-ffast-math\":${opts}:g" \ + ${MY_S}/libtbx/SConscript + + # Get LDFLAGS in format suitable for substitition into SConscript + for i in ${LDFLAGS}; do + optsld="${optsld} \"${i}\"," + done + + optsld=${optsld%,} + + # Fix LDFLAGS which should be as-needed ready + sed -i \ + -e "s:\"-shared\":\"-shared\", ${optsld}:g" \ + ${MY_S}/libtbx/SConscript +} + +src_configure() { + local compiler + local myconf + + myconf="${MY_S}/libtbx/configure.py" + + # Get compiler in the right way + compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)') + myconf="${myconf} --compiler=${compiler}" + + # Precompiling python scripts. It is done in upstreams install script. Perhaps use python_mod_compile, + # but as this script works we should stick to it. + ${python} "${MY_S}/libtbx/command_line/py_compile_all.py" + + # Additional USE flag usage + check_use openmp + myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}" + + use threads && USEthreads="--enable-boost-threads" && \ + ewarn "If using boost threads openmp support is disabled" + + myconf="${myconf} ${USE_threads} --scan-boost" + + mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}" + cd "${MY_B}" + + myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper" + einfo "configuring with ${python} ${myconf}" + + ${python} ${myconf} \ + || die "configure failed" +} + +src_compile() { + local makeopts_exp + + cd "${MY_B}" + + makeopts_exp=${MAKEOPTS/j/j } + makeopts_exp=${makeopts_exp%-l[0-9]*} + + source setpaths_all.sh + + einfo "compiling with libtbx.scons ${makeopts_exp}" + libtbx.scons ${makeopts_exp} .|| die "make failed" +} + +src_test(){ + source "${MY_B}"/setpaths_all.sh + libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \ + libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \ + libtbx.python ${CCTBX_DIST}/run_tests.py ${MAKEOPTS_EXP} \ + || die "test failed" +} + +src_install(){ + # This is what Bill Scott does in the fink package. Do we need this as well? +# -e "s:prepend:append:g" \ + + find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \ + sed -e "s:${MY_S}:/usr/$(get_libdir)/cctbx/cctbx_sources:g" \ + -e "s:${MY_B}:/usr/$(get_libdir)/cctbx/cctbx_build:g" \ + -i '{}' \; || die "Fail to correct path" + + ebegin "removing unnessary files" + rm -r "${S}"/cctbx_sources/scons || die "failed to remove uneeded scons" + find "${S}" -type f -name "*conftest*" -exec rm -f '{}' \; || die "failed to remove uneeded *.o" + find "${S}" -type f -name "*.o" -exec rm -f '{}' \; || die "failed to remove uneeded *.o" + find "${S}" -type f -name "*.c" -exec rm -f '{}' \; || die "failed to remove uneeded *.c" + find "${S}" -type f -name "*.cpp" -exec rm -f '{}' \; || die "failed to remove uneeded *.cpp" + find "${S}" -type f -name "*.pyc" -exec rm -f '{}' \; || die "failed to remove uneeded *.pyc" + eend + + insinto /usr/$(get_libdir)/${PN} + doins -r cctbx_sources cctbx_build || die + +# fperms cannot handle wildcards + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/*sh && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/lib/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/array_family/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/serialization/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/error/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/fftpack/timing/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/lbfgs/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/chiltbx/handle_test && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/bin/* || \ + die + + insinto /etc/profile.d/ + newins "${MY_B}"/setpaths.sh 30cctbx.sh && \ + newins "${MY_B}"/setpaths.csh 30cctbx.csh || \ + die + + sed \ + -e "s:python${PYVER}:python:g"\ + -i "${MY_B}"/setpaths* || die + + cat >> "${T}"/30cctbx <<- EOF + LDPATH="/usr/$(get_libdir)/${PN}/cctbx_build/lib" + EOF + + doenvd "${T}"/30cctbx || die +} + +pkg_postinst () { + python_mod_optimize /usr/$(get_libdir)/${PN}/cctbx_sources +} + +pkg_postrm () { + python_mod_cleanup /usr/$(get_libdir)/${PN}/cctbx_sources +} + +check_use() { + for var in $@; do + if use ${var}; then + printf -v "USE_$var" True + else + printf -v "USE_$var" False + fi + shift + done +} |